Gene detail

Detail information of GWHGAAZE029692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092380.1	0	PREDICTED: WD-40 repeat-containing protein MSI1 [Sesamum indicum]
COG	YP_001868564.1	3E-14	hypothetical protein Npun_F5300
Swissprot	tr\|O22466\|MSI1_SOLLC	0	WD-40 repeat-containing protein MSI1
trEMBL	tr\|B0LUS9\|B0LUS9_TOBAC	0	Multicopy suppressor of IRA1 {ECO:0000313\|EMBL:ABY84675.1}
TAIR10	AT5G58230.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31194153	31204121	+
GWHAAZE00000009	mRNA	31194153	31204121	+
GWHAAZE00000009	exon	31194153	31194497	+
GWHAAZE00000009	exon	31196040	31196243	+
GWHAAZE00000009	exon	31200425	31200577	+
GWHAAZE00000009	exon	31202462	31202586	+
GWHAAZE00000009	exon	31202741	31202836	+
GWHAAZE00000009	exon	31203700	31204121	+
GWHAAZE00000009	CDS	31194153	31194497	+
GWHAAZE00000009	CDS	31196040	31196243	+
GWHAAZE00000009	CDS	31200425	31200577	+
GWHAAZE00000009	CDS	31202462	31202586	+
GWHAAZE00000009	CDS	31202741	31202836	+
GWHAAZE00000009	CDS	31203700	31203937	+
GWHAAZE00000009	three_prime_UTR	31203938	31204121	+

Transcript Sequence
>GWHTAAZE029726 ATGGGGAAAGACGAGGACGAGATGAGGGGAGAGATAGAGGAGAGGCTAATCAACGAAGAGTACAAGATTTGGAAGAAGAACACTCCTTTCTTGTACGATCTGGTCGTCACTCATGCCCTAGAGTGGCCTTCCCTCACCGTCGAGTGGCTCCCCGACCGGGAAGAGCCGCCGGGGAAGGACTACTCCGTTCAGAAGATGATCCTCGGTACCCACACCTCTGAAAATGAGCCTAATTATCTTATGTTAGCGCAGGTTCAGCTCCCTCTAGAGGATGCCGAGAATGATGCTCGTCATTATGACGATGCTCGGTCCGATGTTGGCGGATTTGGTTGCGCCAATGGCAAGCAAACACCATCTAAGCCTCCTCTTGATGGCGCTTGCAGTCCTGATTTGAGGTTGAGAGGTCACAGCACTGAGGGATATGGTTTATCATGGAGTCAGTTCAAACCGGGTCATTTATTAAGTGGTTCTGATGATGCCCAGATATGCTTGTGGGACATTAATGCCACTCCAAAGAATAAGGGTCTAGACGCCATGCAAATATTCAAGGTTCATGAAGGTGTTGTAGAAGATGTAGCATGGCATCTACGGCATGAATACTTGTTTGGTTCAGTTGGGGATGATCAATATTTGCATATATGGGATCTCCGAAGTCCTTCTGTCACAAAGCCTATCCAAACTGTAATGGCCCATCAAAGTGAGGTTAACTGCTTAGCGTTTAATCCTTTCAATGAGTGGGTTGTGGCAACAGGGTCCACTGATAAGACTGTTAAGTTATTCGATATACGCAAGCTATCTACCGCACTCCATACGTTTGATTGTCACAAGGAGGAGGTTTTCCAAGTTGGCTGGAATCCAAAGAATGAGACCATCTTAGCCTCTTGTTGCCTTGGTAGGAGACTCATGGTTTGGGACCTTAGCAGGATCGATGAAGAACAGACGCCAGAGGATGCTGAAGATGGCCCACCGGAGCTGCTATTTATACACGGGGGCCACACTAGTAAAATATCGGATTTCTCTTGGAACCCATGCGAAGATTGGGTGGTGGCCAGTGTAGCCGAAGATAACATACTCCAAATATGGCAAATGGCTGAGAATATATACCATGATGATGATGATCTACCCCCACCTGCTGCTGATGAAACTCCTAAAGGTTCTTAAATCTTTCAAGTTCCTAGTTCAAAGAGAACCAAAAGTGTAAAATTAGTTATAGGAAGTAAGCATGCATTCTTAGTTAATTTTCACACTGTTTTCTCTGTATTATTCAACCTTCCGGTGGGTGAGTTTGTGCTATTGAAATGTAGTTTTGTGTTATAATTTATTCAATGTTCTTTTGCCTGCAGAA

Network for GWHGAAZE029692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12265.9	CAF1C_H4-bd	19	88	2.30E-28
PF00400.33	WD40	179	215	0.085
PF00400.33	WD40	223	261	4.50E-07
PF00400.33	WD40	326	361	0.0013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.377
	SRR3591706	second leaf	13.501
	SRR3591707	mature leaf	13.935
	SRR3591708	Shoot apex	25.692
	SRR3591709	Stem	21.687
	SRR3591710	White floral bud	31.359
	SRR3591711	White flower	33.445
	SRR3591712	Green floral bud	30.802
	SRR3591713	Yellow flower	21.267
SRP173429	SRR8316895	Juvenile bud stage	10.594
	SRR8316896	Juvenile bud stage	18.448
	SRR8316897	Juvenile bud stage	7.092
	SRR8316894	Third green stage	6.802
	SRR8316900	Third green stage	22.080
	SRR8316901	Third green stage	21.278
	SRR8316898	Complete white stage	5.867
	SRR8316899	Complete white stage	27.349
	SRR8316903	Complete white stage	11.157
	SRR8316902	Silver flowering stage	6.509
	SRR8316904	Silver flowering stage	6.467
	SRR8316905	Silver flowering stage	3.644
	SRR8316906	Gold flowering stage	11.230
	SRR8316907	Gold flowering stage	12.460
	SRR8316908	Gold flowering stage	13.799
SRP132670	SRR6706286	Control	7.542
	SRR6706287	Light intensity 50%	8.735
	SRR6706288	Light intensity 20%	9.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.436
	CNS0095593	Slightly white alabastrum(diploid) 2	15.227
	CNS0095594	Slightly white alabastrum(diploid) 3	11.065
	CNS0095595	Whole white alabastrum(diploid) 2	13.583
	CNS0095596	Whole white alabastrum(diploid) 3	14.235
	CNS0095597	Whole white alabastrum(diploid) 4	11.199
	CNS0095598	Silvery flower (diploied) 1	12.019
	CNS0095599	Silvery flower (diploied) 2	10.100
	CNS0095600	Silvery flower (diploied) 3	12.807
	CNS0095601	Golden flower (diploid) 1	12.357
	CNS0095602	Golden flower (diploid) 2	11.853
	CNS0095603	Golden flower (diploid) 3	10.864
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.632
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.690
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.902
	CNS0095610	Silvery flower (tetraploid) 1	13.683
	CNS0095611	Silvery flower (tetraploid) 2	14.921
	CNS0095612	Silvery flower (tetraploid) 3	13.408
	CNS0095613	Golden flower (tetraploid) 1	9.437
	CNS0095614	Golden flower (tetraploid) 2	12.616
	CNS0095615	Golden flower (tetraploid) 3	10.602
CRA001975	CRR073297	Stem 1	24.730
	CRR073298	Stem 2	22.476
	CRR073299	Stem 3	23.883
	CRR073300	Leaf 1	27.835
	CRR073301	Leaf 2	22.580
	CRR073302	Leaf 3	23.228
	CRR073303	Juvenile bud 1	26.090
	CRR073304	Juvenile bud 2	17.487
	CRR073305	Juvenile bud 3	27.336
	CRR073306	Third green 1	8.097
	CRR073307	Third green 2	8.982
	CRR073308	Third green 3	9.392
	CRR073309	Second white 1	11.550
	CRR073310	Second white 2	12.394
	CRR073311	Second white 3	9.273
	CRR073312	Silver flowering 1	10.080
	CRR073313	Silver flowering 2	9.219
	CRR073314	Silver flowering 3	7.797
	CRR073315	Gold flowering 1	18.118
	CRR073316	Gold flowering 2	20.400
	CRR073317	Gold flowering 3	16.694
	CRR073318	Tawny withering 1	22.041
	CRR073319	Tawny withering 2	18.435
	CRR073320	Tawny withering 3	27.216