Detail information of GWHGAAZE029687


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010657824.10PREDICTED: separase isoform X3 [Vitis vinifera]
Swissprottr|Q5IBC5|ESP1_ARATH0Separase
trEMBLtr|V4V0E7|V4V0E7_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR45189.1}
TAIR10AT4G22970.20homolog of separase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3112834031142404-
GWHAAZE00000009mRNA3112834031142404-
GWHAAZE00000009exon3114175831142404-
GWHAAZE00000009exon3114091531141092-
GWHAAZE00000009exon3114072331140830-
GWHAAZE00000009exon3113765531137807-
GWHAAZE00000009exon3113712831137525-
GWHAAZE00000009exon3113627631136381-
GWHAAZE00000009exon3113601031136135-
GWHAAZE00000009exon3113581531135928-
GWHAAZE00000009exon3113435231134645-
GWHAAZE00000009exon3113391631134032-
GWHAAZE00000009exon3113355931133780-
GWHAAZE00000009exon3113284031132977-
GWHAAZE00000009exon3113197631132344-
GWHAAZE00000009exon3113177531131864-
GWHAAZE00000009exon3113128031131543-
GWHAAZE00000009exon3113105231131175-
GWHAAZE00000009exon3112991431130672-
GWHAAZE00000009exon3112834031128590-
GWHAAZE00000009CDS3114175831142404-
GWHAAZE00000009CDS3114091531141092-
GWHAAZE00000009CDS3114072331140830-
GWHAAZE00000009CDS3113765531137807-
GWHAAZE00000009CDS3113712831137525-
GWHAAZE00000009CDS3113627631136381-
GWHAAZE00000009CDS3113601031136135-
GWHAAZE00000009CDS3113581531135928-
GWHAAZE00000009CDS3113435231134645-
GWHAAZE00000009CDS3113391631134032-
GWHAAZE00000009CDS3113355931133780-
GWHAAZE00000009CDS3113284031132977-
GWHAAZE00000009CDS3113197631132344-
GWHAAZE00000009CDS3113177531131864-
GWHAAZE00000009CDS3113128031131543-
GWHAAZE00000009CDS3113105231131175-
GWHAAZE00000009CDS3112991431130672-
GWHAAZE00000009CDS3112834031128590-
Transcript Sequence

Network for GWHGAAZE029687

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02365ESP1 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.565
SRR3591706second leaf0.757
SRR3591707mature leaf0.406
SRR3591708Shoot apex3.528
SRR3591709Stem1.275
SRR3591710White floral bud0.758
SRR3591711White flower1.512
SRR3591712Green floral bud1.033
SRR3591713Yellow flower0.776
SRP173429 SRR8316895Juvenile bud stage 1.819
SRR8316896Juvenile bud stage 2.224
SRR8316897Juvenile bud stage 0.845
SRR8316894Third green stage 1.062
SRR8316900Third green stage 1.527
SRR8316901Third green stage 1.541
SRR8316898Complete white stage 0.110
SRR8316899Complete white stage 1.408
SRR8316903Complete white stage 0.889
SRR8316902Silver flowering stage0.612
SRR8316904Silver flowering stage0.823
SRR8316905Silver flowering stage0.284
SRR8316906Gold flowering stage 0.632
SRR8316907Gold flowering stage 0.593
SRR8316908Gold flowering stage 0.879
SRP132670SRR6706286Control1.804
SRR6706287Light intensity 50%1.920
SRR6706288Light intensity 20%1.770
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.479
CNS0095593Slightly white alabastrum(diploid) 20.323
CNS0095594Slightly white alabastrum(diploid) 30.295
CNS0095595Whole white alabastrum(diploid) 20.616
CNS0095596Whole white alabastrum(diploid) 30.449
CNS0095597Whole white alabastrum(diploid) 40.386
CNS0095598Silvery flower (diploied) 11.493
CNS0095599Silvery flower (diploied) 20.938
CNS0095600Silvery flower (diploied) 31.297
CNS0095601Golden flower (diploid) 10.849
CNS0095602Golden flower (diploid) 21.668
CNS0095603Golden flower (diploid) 31.411
CNS0095604Slightly white alabastrum(tetraploid) 10.831
CNS0095605Slightly white alabastrum(tetraploid) 20.502
CNS0095606Slightly white alabastrum(tetraploid) 32.359
CNS0095607Whole white alabastrum(tetraploid) 10.261
CNS0095608Whole white alabastrum(tetraploid) 20.136
CNS0095609Whole white alabastrum(tetraploid) 31.237
CNS0095610Silvery flower (tetraploid) 11.095
CNS0095611Silvery flower (tetraploid) 21.661
CNS0095612Silvery flower (tetraploid) 31.324
CNS0095613Golden flower (tetraploid) 10.330
CNS0095614Golden flower (tetraploid) 20.646
CNS0095615Golden flower (tetraploid) 30.380
CRA001975CRR073297Stem 11.514
CRR073298Stem 21.935
CRR073299Stem 31.266
CRR073300Leaf 10.978
CRR073301Leaf 20.721
CRR073302Leaf 30.653
CRR073303Juvenile bud 10.570
CRR073304Juvenile bud 20.264
CRR073305Juvenile bud 30.902
CRR073306Third green 10.131
CRR073307Third green 20.194
CRR073308Third green 30.096
CRR073309Second white 10.042
CRR073310Second white 20.126
CRR073311Second white 30.148
CRR073312Silver flowering 10.295
CRR073313Silver flowering 20.068
CRR073314Silver flowering 30.019
CRR073315Gold flowering 10.266
CRR073316Gold flowering 20.911
CRR073317Gold flowering 30.209
CRR073318Tawny withering 10.497
CRR073319Tawny withering 20.339
CRR073320Tawny withering 30.194