Gene detail

Detail information of GWHGAAZE029686

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657824.1	0	PREDICTED: separase isoform X3 [Vitis vinifera]
Swissprot	tr\|Q5IBC5\|ESP1_ARATH	0	Separase
trEMBL	tr\|B9SSN4\|B9SSN4_RICCO	0	Separase, putative {ECO:0000313\|EMBL:EEF33373.1}
TAIR10	AT4G22970.1	1E-154	homolog of separase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31102867	31111192	-
GWHAAZE00000009	mRNA	31102867	31111192	-
GWHAAZE00000009	exon	31111133	31111192	-
GWHAAZE00000009	exon	31110454	31110654	-
GWHAAZE00000009	exon	31108758	31108810	-
GWHAAZE00000009	exon	31108446	31108675	-
GWHAAZE00000009	exon	31107264	31107516	-
GWHAAZE00000009	exon	31105338	31105743	-
GWHAAZE00000009	exon	31104880	31105119	-
GWHAAZE00000009	exon	31104020	31104107	-
GWHAAZE00000009	exon	31102867	31103670	-
GWHAAZE00000009	CDS	31111133	31111192	-
GWHAAZE00000009	CDS	31110454	31110654	-
GWHAAZE00000009	CDS	31108758	31108810	-
GWHAAZE00000009	CDS	31108446	31108675	-
GWHAAZE00000009	CDS	31107264	31107516	-
GWHAAZE00000009	CDS	31105338	31105743	-
GWHAAZE00000009	CDS	31104880	31105119	-
GWHAAZE00000009	CDS	31104020	31104107	-
GWHAAZE00000009	CDS	31103150	31103670	-
GWHAAZE00000009	three_prime_UTR	31102867	31103149	-

Transcript Sequence
>GWHTAAZE029720 ATGTCTCAGTTGACACTTACCTTCGTACTTTGCCGCGAGATTCCTGACATTTTCCAAAAGGTTTCCAGGTTGCTTGCGGTTCTCCATATTCTTTCAACCTCAGTCGAGCCTTTTACTTTGTCTCCATCTCCCTACAAAACAATCTCTGGAAGCCAGTTGGCATCATTTTTCCATCAAGCTTCACTCGGAACTCATCTCAATCACCAGTTGTTTTCACATATGACTTGGAAGAAAAAAATCGAAGATCCTATTGATTTTGAGGGTGATGGTCCTAGCTCAACTTCCATTGGTCCAGAAACGCTCAACTCGCTTAGGCTTGCACCCGAATCGGTTCAAGATCTTGAAGGATTTGTGTTGAGCTTTTTTCAGGGTCTTCCTTATGCTACAATAGTATGTGTTAGTGTTCTTGGTGATGCTTATGCCAGATTGCTAAGAGAATTGCTTTCTTCCCCTTCCCCTGTTCATGCATGGATTCTGTTATCCCGCTTAAATGCAAATGGTCAACCTATTGTCATACTTCTGCCTGTGGGTTCAATCTTAGAAGCATCAGAAACATCAGATGATGATGATGAAAGCTCCTGCTCTGGAATCCCCTATGAAGGCGGAGATTTTGTTAAACAGTGGCGCTGTCCTTGGGGCTCCACTGTGGTTGATGATGTAGCCCCAATGTTTAAAGTGATATTGGAGGAGAATTACTTATCATCTTCAACATTTCCTCTGGAAGATAATAAAACAAACAGGTCACTTTGGTGGTTGCGGAGGAGAAGGCTTGATCAGCGCCTTGGTAAATTTCTCAGGGATTTTGAAGATTCATGGTTTGGTCCTTGGAAATACTTGTTCTTGGGGGATTGGTCAGATTCCGAACACCTGGATTTAGTACAAAAGAAACTGGTGGATGATCTGAAGTCTAAATACAAAGTGAATGTACCTGAGAGCGTGCTTAAAGTTATTGTTGGAGGTGTTAACTATGCCTGTCAAAGAGAAGAATGTGTTTCACAGATAATTTTGAATAAAGGATGCTACGTTGGTGGAATTGGAGATCGTCACAATGAAAGCTCAAAGTTGCTATCCAAAAATTGTGAGGGAATCAAGCGTTTATCGCAGTCAATTTTCAAACTAATAAATGAAACGGCCAATGACATTGAAGAGAGAGAATTTGAGAATAGACAACCTATTATCTTGGTGTTGGATTTTGAAGTACAAATGCTCCCCTGGGAGAATCTACCAATACTAAGAAACCAGGAGGTTTATCGTATGCCTTCAATTGGCAGTATCTCTGCCACTCTAGATAGAAGTCGTCATTTACAAGAAAAGGTCGGACCGAATTCTGTGCTCTTCCCATTGATAGATCCTCTAAATGCATATTATTTGTTGAATCCAAGTGGGGATCTCAGCAGCACAGAGGTTGAATTCAGAAGTTGGTTTAGAGACCAAAACTTGGAGGGGAAGACTGGAATTACACCCACAATTGAAGAACTGAGTGTAGCTTTGAAAAGCCGTGACCTCTTTATTTACTTTGGTCATGGGAGCGGGGCACAATATATTCCTGGGCACGAGATTCAGAAACTAGAAAGGTGCGCTGCCACCATGCTGATGGGCTGCAGTAGTGGATCGCTGTCACTAAATGGGGCCTACACCCCACAAGGTGCCCCACTTAGCTATCTCTTAGCGGGTTCCCCTGTTATAGTTGCTAATTTATGGGAAGTAACAGACAAGGATATTGATCGATTCGGCAAGGCTATGCTTGATGCTTGGTTAATAGAAAGATCAAAAGCTTCAGGTGTTTGTGATCAATGTGAATTAATTTTGGATAAATTCAAGTCCCTAACTATTAACGGAACTAAAGGAAAAGGGAGGAACAAAATCTCGAGAAAGAAAATATCCGAATCTCTTGATGTTAGTAATGGTAATATGGACGATCATTGTTGTAAGCATGGACGGAAGATTGGATCGTTCATGCACAAAGCTCGAGAAGCTTGTACTTTGTCCTTCCTCATTGGCGCAGCACCTGTTTGTTATGGTGTCCCAACAGGTATAAAGAAGAAACTTTAATTTGTTTGGGGACTATTTTTCTTGGTAATCGAAAAGGGACTAGTAGCACAGTCACATTGCTTGTAAAGATGTTGTAACGGGCATACATTATCCCCTCCATATAGCTTAGTTCGTACCAGTTTCTATTCATGCTTTCCTGAAGCATTAGAAACTTGGTTGTTACTTCAAAAGTGTTTGCTTGTTAGATAGATTCACAGAAGTGAGTTCTTAGTCTATGTATATAGGTCATACGTCCTTTTTTCCCCTGTTGGAAACTAGGTCAAGTATCATTATCTAGAAGTTT

Network for GWHGAAZE029686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03568.18	Peptidase_C50	155	574	2.90E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02365	ESP1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.064
	SRR3591706	second leaf	1.445
	SRR3591707	mature leaf	1.661
	SRR3591708	Shoot apex	11.293
	SRR3591709	Stem	19.221
	SRR3591710	White floral bud	1.380
	SRR3591711	White flower	2.092
	SRR3591712	Green floral bud	1.994
	SRR3591713	Yellow flower	2.116
SRP173429	SRR8316895	Juvenile bud stage	4.254
	SRR8316896	Juvenile bud stage	5.227
	SRR8316897	Juvenile bud stage	1.845
	SRR8316894	Third green stage	1.869
	SRR8316900	Third green stage	3.567
	SRR8316901	Third green stage	3.422
	SRR8316898	Complete white stage	0.522
	SRR8316899	Complete white stage	2.179
	SRR8316903	Complete white stage	1.012
	SRR8316902	Silver flowering stage	0.831
	SRR8316904	Silver flowering stage	1.676
	SRR8316905	Silver flowering stage	0.401
	SRR8316906	Gold flowering stage	1.640
	SRR8316907	Gold flowering stage	1.331
	SRR8316908	Gold flowering stage	2.200
SRP132670	SRR6706286	Control	1.581
	SRR6706287	Light intensity 50%	2.490
	SRR6706288	Light intensity 20%	2.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.749
	CNS0095593	Slightly white alabastrum(diploid) 2	4.266
	CNS0095594	Slightly white alabastrum(diploid) 3	3.255
	CNS0095595	Whole white alabastrum(diploid) 2	2.889
	CNS0095596	Whole white alabastrum(diploid) 3	2.633
	CNS0095597	Whole white alabastrum(diploid) 4	2.122
	CNS0095598	Silvery flower (diploied) 1	1.990
	CNS0095599	Silvery flower (diploied) 2	2.913
	CNS0095600	Silvery flower (diploied) 3	2.598
	CNS0095601	Golden flower (diploid) 1	2.619
	CNS0095602	Golden flower (diploid) 2	1.757
	CNS0095603	Golden flower (diploid) 3	2.089
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.537
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.647
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.140
	CNS0095610	Silvery flower (tetraploid) 1	2.887
	CNS0095611	Silvery flower (tetraploid) 2	2.428
	CNS0095612	Silvery flower (tetraploid) 3	3.252
	CNS0095613	Golden flower (tetraploid) 1	0.935
	CNS0095614	Golden flower (tetraploid) 2	1.364
	CNS0095615	Golden flower (tetraploid) 3	0.925
CRA001975	CRR073297	Stem 1	3.599
	CRR073298	Stem 2	3.103
	CRR073299	Stem 3	2.209
	CRR073300	Leaf 1	2.320
	CRR073301	Leaf 2	2.078
	CRR073302	Leaf 3	1.188
	CRR073303	Juvenile bud 1	1.774
	CRR073304	Juvenile bud 2	0.582
	CRR073305	Juvenile bud 3	2.059
	CRR073306	Third green 1	0.386
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.216
	CRR073309	Second white 1	0.192
	CRR073310	Second white 2	0.286
	CRR073311	Second white 3	0.128
	CRR073312	Silver flowering 1	0.092
	CRR073313	Silver flowering 2	0.152
	CRR073314	Silver flowering 3	0.178
	CRR073315	Gold flowering 1	0.890
	CRR073316	Gold flowering 2	1.770
	CRR073317	Gold flowering 3	0.634
	CRR073318	Tawny withering 1	1.736
	CRR073319	Tawny withering 2	1.517
	CRR073320	Tawny withering 3	2.278