Gene detail

Detail information of GWHGAAZE029582

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087645.1	3.5843E-176	PREDICTED: non-lysosomal glucosylceramidase isoform X4 [Sesamum indicum]
COG	YP_590763.1	7E-72	hypothetical protein Acid345_1688
trEMBL	tr\|M1CBK2\|M1CBK2_SOLTU	6E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400064004}
TAIR10	AT5G49900.1	1E-126	Beta-glucosidase, GBA2 type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28953724	28955784	+
GWHAAZE00000009	mRNA	28953724	28955784	+
GWHAAZE00000009	exon	28953724	28954199	+
GWHAAZE00000009	exon	28955094	28955384	+
GWHAAZE00000009	exon	28955511	28955784	+
GWHAAZE00000009	CDS	28953724	28954199	+
GWHAAZE00000009	CDS	28955094	28955384	+
GWHAAZE00000009	CDS	28955511	28955784	+

Transcript Sequence
>GWHTAAZE029616 ATGTATGATCCATGGTTCGAAGTAAATTATTACAACCTATACAACACCGACAGGTGGAAAGATCTGAACCCTAAATTTGTTCTCCAAGTTTACAGGGATGTTGTTGCCACGGGTGATAAAAACTTTGCGAAAGCTGTTTGGCCGTCTGTTTATGTAGCAATGGCTTATATGGAGCAGTTTGATAAAGATGGGGATGGAATGATTGAAAATGAAGGGTTCCCTGATCAGACGTATGATACATGGTCTGTTAAAGGGGTGAGTGCATATTGCGGTGGCTTGTGGGTAGCGGCTTTGCAGGCTGCGTCAGCTATGGCCGGTGTAATTGGTGATAAGGGTAATGAAGATTACTTTTGGTTTAGGTTTGAGAAAGCTAAGGCTGTATATGAGACGCTGTGGAATGGTTCGTACTTTAACTATGACAACAGTGGTGATACTGCGAGTTCATCTATTCAATCTGATCAGTTGGCTGGACAATGGTATGCCCGAGCGTGTGGTCTTCTACCTATTGTCGATGAAGAAAAAGCAAAAAGTGCACTTGAGAAAATCTATAATTTCAATGTCTTAAAGGTGAAGGGTGGGACGAGGGGGGCTATGAATGGGATGCTGCCAAATGGAGAACCTGACAAGACAAATATGCAGTCACGGGAAATATGGATCGGAGTAACATATGGGGTTGCTGCAGCTATGATTCATGAAGACAAGCAAGAAATGGGATTTCAAACTGCATCTGGAGTCTATGAAGCTGCTTGGTCTAACGAAGGACTCGGGTATTCATTTCAAACTCCAGAGGCTTGGGACATCGAAGGCCAATATAGATCTCTGGGTTACATGCGCCCTTGGCCATATGGGCAATGCAGTGGGCTGTCGCACCCAAAACCTCCCAAGCAAGAAACGCCGGAAATAAAGGAAGAATCTGTGTTGATGCAACACACAGGGTTCAAAAGAGTCGCTCGTCTTCTCAAAATGCCTGAAGAGGAAGGCTCAAGAAGTCTTTCCAGGTTATTTTCGACTACACTTGTAAAAGAATGTCCATGTGAATGA

Network for GWHGAAZE029582

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04685.14	DUF608	3	279	2.10E-118

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17108	GBA2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.480
	SRR3591706	second leaf	3.586
	SRR3591707	mature leaf	4.188
	SRR3591708	Shoot apex	5.333
	SRR3591709	Stem	5.567
	SRR3591710	White floral bud	10.323
	SRR3591711	White flower	11.180
	SRR3591712	Green floral bud	10.266
	SRR3591713	Yellow flower	13.907
SRP173429	SRR8316895	Juvenile bud stage	2.052
	SRR8316896	Juvenile bud stage	4.336
	SRR8316897	Juvenile bud stage	3.887
	SRR8316894	Third green stage	1.879
	SRR8316900	Third green stage	5.214
	SRR8316901	Third green stage	6.742
	SRR8316898	Complete white stage	4.451
	SRR8316899	Complete white stage	14.274
	SRR8316903	Complete white stage	7.902
	SRR8316902	Silver flowering stage	4.701
	SRR8316904	Silver flowering stage	6.492
	SRR8316905	Silver flowering stage	3.450
	SRR8316906	Gold flowering stage	12.373
	SRR8316907	Gold flowering stage	8.959
	SRR8316908	Gold flowering stage	8.853
SRP132670	SRR6706286	Control	4.992
	SRR6706287	Light intensity 50%	4.309
	SRR6706288	Light intensity 20%	5.293
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.288
	CNS0095593	Slightly white alabastrum(diploid) 2	3.494
	CNS0095594	Slightly white alabastrum(diploid) 3	2.670
	CNS0095595	Whole white alabastrum(diploid) 2	3.673
	CNS0095596	Whole white alabastrum(diploid) 3	4.419
	CNS0095597	Whole white alabastrum(diploid) 4	2.491
	CNS0095598	Silvery flower (diploied) 1	8.126
	CNS0095599	Silvery flower (diploied) 2	5.733
	CNS0095600	Silvery flower (diploied) 3	6.891
	CNS0095601	Golden flower (diploid) 1	6.128
	CNS0095602	Golden flower (diploid) 2	6.639
	CNS0095603	Golden flower (diploid) 3	8.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.742
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.542
	CNS0095610	Silvery flower (tetraploid) 1	5.541
	CNS0095611	Silvery flower (tetraploid) 2	8.735
	CNS0095612	Silvery flower (tetraploid) 3	6.667
	CNS0095613	Golden flower (tetraploid) 1	4.300
	CNS0095614	Golden flower (tetraploid) 2	6.622
	CNS0095615	Golden flower (tetraploid) 3	3.282
CRA001975	CRR073297	Stem 1	4.294
	CRR073298	Stem 2	3.865
	CRR073299	Stem 3	3.360
	CRR073300	Leaf 1	6.333
	CRR073301	Leaf 2	6.839
	CRR073302	Leaf 3	5.306
	CRR073303	Juvenile bud 1	5.405
	CRR073304	Juvenile bud 2	6.341
	CRR073305	Juvenile bud 3	7.030
	CRR073306	Third green 1	5.220
	CRR073307	Third green 2	2.903
	CRR073308	Third green 3	3.780
	CRR073309	Second white 1	4.108
	CRR073310	Second white 2	4.746
	CRR073311	Second white 3	4.442
	CRR073312	Silver flowering 1	3.669
	CRR073313	Silver flowering 2	3.341
	CRR073314	Silver flowering 3	2.415
	CRR073315	Gold flowering 1	3.959
	CRR073316	Gold flowering 2	3.731
	CRR073317	Gold flowering 3	2.741
	CRR073318	Tawny withering 1	4.597
	CRR073319	Tawny withering 2	2.886
	CRR073320	Tawny withering 3	2.269