Gene detail

Detail information of GWHGAAZE029580

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007041163.1	1.1327E-95	Non-lysosomal glucosylceramidase [Theobroma cacao]
COG	YP_001543081.1	6E-17	hypothetical protein Haur_0301
trEMBL	tr\|A0A061DW00\|A0A061DW00_THECC	4E-96	Non-lysosomal glucosylceramidase {ECO:0000256\|PIRNR:PIRNR028944}
TAIR10	AT5G49900.1	3E-75	Beta-glucosidase, GBA2 type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28948612	28950607	+
GWHAAZE00000009	mRNA	28948612	28950607	+
GWHAAZE00000009	exon	28948612	28948691	+
GWHAAZE00000009	exon	28949049	28949146	+
GWHAAZE00000009	exon	28949241	28949344	+
GWHAAZE00000009	exon	28949728	28949781	+
GWHAAZE00000009	exon	28950002	28950057	+
GWHAAZE00000009	exon	28950266	28950304	+
GWHAAZE00000009	exon	28950433	28950607	+
GWHAAZE00000009	CDS	28948612	28948691	+
GWHAAZE00000009	CDS	28949049	28949146	+
GWHAAZE00000009	CDS	28949241	28949344	+
GWHAAZE00000009	CDS	28949728	28949781	+
GWHAAZE00000009	CDS	28950002	28950057	+
GWHAAZE00000009	CDS	28950266	28950304	+
GWHAAZE00000009	CDS	28950433	28950607	+

Transcript Sequence
>GWHTAAZE029614 ATGCAGGCATTTGTTTCACGCCCAAACGGTGAAAAGTACTCTACTGTGTTATGCCCACAGAACCTCGAAGAGTTGAATAAAGAAAGTTCACCTTCTGGGATAGGATCTTGGGACTGGAAACTTAGTGGGCATAATTCTCATTACGCATTGTATCCAAGGGCTTGGACTGTATACGAAGGTGAGCCTGATCCGTCACTGAGAATAGTCTGTCGTCAAATTTCCCCTATTATCCCCAATAATTACAAGGAGAGCAGCTTCCCAGTTGCAGTATTTACTTTCACGCTGTCTAATATGGGAAATACAGCTGCTGATGTCACTTTGCTTTTCACATGGGAGAATTCTGTCGGTGGGGTATCCGGTTTATCTGGCCGTCACTCCAATTCAGAGATTGTGGTGAAGGATGGCATTCATGGTGTATCCCTGCGTCACATGAGTGCCAATGGACTACCCCCAGTAATGTTTGCTATTGCAGCTGAAGCAACGGATGCCGTTCATGTCTCTGAGTGCCCTTGCTTTATTTTATCTGGCAACTCCCAGGGTATCACAGCAAAAGACATGTGGAATGAAATAAAAGAGGTTGGTCAACTACTCTTTTTACTTCTCTAA

Network for GWHGAAZE029580

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12215.9	Glyco_hydr_116N	3	196	4.50E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17108	GBA2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.392
	SRR3591706	second leaf	0.930
	SRR3591707	mature leaf	1.976
	SRR3591708	Shoot apex	1.541
	SRR3591709	Stem	1.075
	SRR3591710	White floral bud	3.142
	SRR3591711	White flower	2.769
	SRR3591712	Green floral bud	2.426
	SRR3591713	Yellow flower	6.060
SRP173429	SRR8316895	Juvenile bud stage	0.078
	SRR8316896	Juvenile bud stage	1.680
	SRR8316897	Juvenile bud stage	0.633
	SRR8316894	Third green stage	0.433
	SRR8316900	Third green stage	0.942
	SRR8316901	Third green stage	1.892
	SRR8316898	Complete white stage	0.751
	SRR8316899	Complete white stage	1.386
	SRR8316903	Complete white stage	0.232
	SRR8316902	Silver flowering stage	0.338
	SRR8316904	Silver flowering stage	2.312
	SRR8316905	Silver flowering stage	0.265
	SRR8316906	Gold flowering stage	0.879
	SRR8316907	Gold flowering stage	1.755
	SRR8316908	Gold flowering stage	1.674
SRP132670	SRR6706286	Control	1.301
	SRR6706287	Light intensity 50%	1.289
	SRR6706288	Light intensity 20%	0.951
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.605
	CNS0095593	Slightly white alabastrum(diploid) 2	1.284
	CNS0095594	Slightly white alabastrum(diploid) 3	0.545
	CNS0095595	Whole white alabastrum(diploid) 2	0.368
	CNS0095596	Whole white alabastrum(diploid) 3	0.360
	CNS0095597	Whole white alabastrum(diploid) 4	0.309
	CNS0095598	Silvery flower (diploied) 1	1.556
	CNS0095599	Silvery flower (diploied) 2	1.490
	CNS0095600	Silvery flower (diploied) 3	2.638
	CNS0095601	Golden flower (diploid) 1	0.101
	CNS0095602	Golden flower (diploid) 2	4.033
	CNS0095603	Golden flower (diploid) 3	3.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.738
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.792
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.933
	CNS0095610	Silvery flower (tetraploid) 1	1.246
	CNS0095611	Silvery flower (tetraploid) 2	3.335
	CNS0095612	Silvery flower (tetraploid) 3	2.542
	CNS0095613	Golden flower (tetraploid) 1	1.431
	CNS0095614	Golden flower (tetraploid) 2	2.737
	CNS0095615	Golden flower (tetraploid) 3	2.019
CRA001975	CRR073297	Stem 1	1.277
	CRR073298	Stem 2	1.265
	CRR073299	Stem 3	3.435
	CRR073300	Leaf 1	1.099
	CRR073301	Leaf 2	0.507
	CRR073302	Leaf 3	3.052
	CRR073303	Juvenile bud 1	2.414
	CRR073304	Juvenile bud 2	1.239
	CRR073305	Juvenile bud 3	1.919
	CRR073306	Third green 1	3.036
	CRR073307	Third green 2	3.011
	CRR073308	Third green 3	0.603
	CRR073309	Second white 1	2.720
	CRR073310	Second white 2	2.789
	CRR073311	Second white 3	4.244
	CRR073312	Silver flowering 1	4.430
	CRR073313	Silver flowering 2	1.206
	CRR073314	Silver flowering 3	3.178
	CRR073315	Gold flowering 1	1.777
	CRR073316	Gold flowering 2	3.911
	CRR073317	Gold flowering 3	1.816
	CRR073318	Tawny withering 1	0.682
	CRR073319	Tawny withering 2	0.722
	CRR073320	Tawny withering 3	2.022