Gene detail

Detail information of GWHGAAZE029501

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009626107.1	1.87159E-56	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZVH0\|FEZ_ARATH	6E-35	Protein FEZ
trEMBL	tr\|A0A059B9J9\|A0A059B9J9_EUCGR	1E-56	Uncharacterized protein {ECO:0000313\|EMBL:KCW62561.1}
TAIR10	AT2G02450.2	3E-42	NAC domain containing protein 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24377095	24380271	+
GWHAAZE00000009	mRNA	24377095	24380271	+
GWHAAZE00000009	exon	24377095	24377353	+
GWHAAZE00000009	exon	24377951	24378033	+
GWHAAZE00000009	exon	24379693	24380271	+
GWHAAZE00000009	CDS	24377095	24377353	+
GWHAAZE00000009	CDS	24377951	24378033	+
GWHAAZE00000009	CDS	24379693	24380271	+

Transcript Sequence
>GWHTAAZE029535 TTTATGGCAATTGCAGTATTGACCATGAACCAAGAAGCTCAAGACCATGAAAGCAACAACAACAACAACAACGACAACAACAACAACAACAACAAAGACGAGCACGAACATGATTTGGTCATGCCCGGTTTTCGCTTCCACCCCACCGAAGAAGAACTTGTTGAGTTTTACCTTCGTCGTAAGGTTGAAGGCAAGAGATTCAATGTTGAGCTCATCACTTTTCTTGATCTTTATCGCTACGATCCTTGGGAACTTCCCGCTTTGGCAGCAATTGGGGAGAAAGAATGGTTCTTTTATGTCCCCAGAGATCGAAAATATCGAAACGGGGATAGGCCTAATCGCGCCGAAATTTCACTTTGTCGCGTCTACAAGAGAGCCGGAGTAGAGGATCACCCATGTATCCCTCGGTCTATTCCCACGCGGGCTTCTGCATCAACACAATCCAGCAAAAAACAACACGAAATCTTGTACCAATCAATGGATAGATTCCAATCTTTTGGAACCAATAATTCAAATCAAATCGAGGAGAAAATGGGCGAAACGAGTGGGAGTAGCGTTACGAACGCGGGGACAGATCTCGGGCTTTCCAGCCACAACTCTTACGTTCCATTAATACCCGTAACAGCAACGGCGACTACACTTGTACCACATGCTTCGTCGCTTGTACCTAACTGCACTACTATCTTCAATGACTCAACAAGTACTAGTATGGTGCCACCAAATGGAGTTGATGATTTCCATAGACTAATTAACTACCATCAACAAGTTTCTATGATTCATCAGCAGCAGCAAATATTTTCTACTAATTTGCAGCCTCAAATACTACTAAATGGATCAGTTCACGGCCCGTTTTCGGATAGACTATGGGAATGGAACTCAATGACAGAGGCAAGCAAAGATTACACTGGCCCTTTTAAGTAA

Network for GWHGAAZE029501

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	42	114	5.40E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.720
	SRR3591706	second leaf	10.463
	SRR3591707	mature leaf	21.434
	SRR3591708	Shoot apex	6.212
	SRR3591709	Stem	0.736
	SRR3591710	White floral bud	1.307
	SRR3591711	White flower	0.775
	SRR3591712	Green floral bud	2.722
	SRR3591713	Yellow flower	0.619
SRP173429	SRR8316895	Juvenile bud stage	0.952
	SRR8316896	Juvenile bud stage	0.740
	SRR8316897	Juvenile bud stage	0.498
	SRR8316894	Third green stage	0.680
	SRR8316900	Third green stage	1.983
	SRR8316901	Third green stage	1.890
	SRR8316898	Complete white stage	0.439
	SRR8316899	Complete white stage	1.339
	SRR8316903	Complete white stage	0.044
	SRR8316902	Silver flowering stage	0.333
	SRR8316904	Silver flowering stage	0.476
	SRR8316905	Silver flowering stage	0.265
	SRR8316906	Gold flowering stage	0.300
	SRR8316907	Gold flowering stage	0.164
	SRR8316908	Gold flowering stage	0.128
SRP132670	SRR6706286	Control	1.826
	SRR6706287	Light intensity 50%	1.929
	SRR6706288	Light intensity 20%	3.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.414
	CNS0095593	Slightly white alabastrum(diploid) 2	3.369
	CNS0095594	Slightly white alabastrum(diploid) 3	2.349
	CNS0095595	Whole white alabastrum(diploid) 2	2.448
	CNS0095596	Whole white alabastrum(diploid) 3	2.347
	CNS0095597	Whole white alabastrum(diploid) 4	2.100
	CNS0095598	Silvery flower (diploied) 1	0.977
	CNS0095599	Silvery flower (diploied) 2	1.839
	CNS0095600	Silvery flower (diploied) 3	1.463
	CNS0095601	Golden flower (diploid) 1	1.122
	CNS0095602	Golden flower (diploid) 2	0.571
	CNS0095603	Golden flower (diploid) 3	1.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.234
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.741
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.281
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.467
	CNS0095610	Silvery flower (tetraploid) 1	0.317
	CNS0095611	Silvery flower (tetraploid) 2	0.976
	CNS0095612	Silvery flower (tetraploid) 3	0.768
	CNS0095613	Golden flower (tetraploid) 1	0.678
	CNS0095614	Golden flower (tetraploid) 2	0.633
	CNS0095615	Golden flower (tetraploid) 3	0.221
CRA001975	CRR073297	Stem 1	2.335
	CRR073298	Stem 2	3.228
	CRR073299	Stem 3	1.080
	CRR073300	Leaf 1	2.777
	CRR073301	Leaf 2	4.096
	CRR073302	Leaf 3	3.564
	CRR073303	Juvenile bud 1	1.402
	CRR073304	Juvenile bud 2	3.243
	CRR073305	Juvenile bud 3	1.439
	CRR073306	Third green 1	1.884
	CRR073307	Third green 2	0.804
	CRR073308	Third green 3	1.373
	CRR073309	Second white 1	0.049
	CRR073310	Second white 2	0.244
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.284
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	6.372
	CRR073316	Gold flowering 2	7.566
	CRR073317	Gold flowering 3	3.463
	CRR073318	Tawny withering 1	3.697
	CRR073319	Tawny withering 2	2.434
	CRR073320	Tawny withering 3	2.623