Detail information of GWHGAAZE029419


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18237.10unnamed protein product [Coffea canephora]
COGYP_001867499.10dihydrolipoamide dehydrogenase
Swissprottr|A8MS68|PLPD1_ARATH0Dihydrolipoyl dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|A0A068VCE8|A0A068VCE8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_219 {ECO:0000313|EMBL:CDP18237.1}
TAIR10AT3G16950.10lipoamide dehydrogenase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2189538621905474-
GWHAAZE00000009mRNA2189538621905474-
GWHAAZE00000009exon2190513921905474-
GWHAAZE00000009exon2190278021902926-
GWHAAZE00000009exon2190147321901607-
GWHAAZE00000009exon2190121421901331-
GWHAAZE00000009exon2190051121900635-
GWHAAZE00000009exon2189967521899800-
GWHAAZE00000009exon2189950521899585-
GWHAAZE00000009exon2189878021898842-
GWHAAZE00000009exon2189859921898673-
GWHAAZE00000009exon2189747521897553-
GWHAAZE00000009exon2189728721897387-
GWHAAZE00000009exon2189716121897199-
GWHAAZE00000009exon2189670021896816-
GWHAAZE00000009exon2189615021896221-
GWHAAZE00000009exon2189585221895938-
GWHAAZE00000009exon2189538621895439-
GWHAAZE00000009CDS2190513921905474-
GWHAAZE00000009CDS2190278021902926-
GWHAAZE00000009CDS2190147321901607-
GWHAAZE00000009CDS2190121421901331-
GWHAAZE00000009CDS2190051121900635-
GWHAAZE00000009CDS2189967521899800-
GWHAAZE00000009CDS2189950521899585-
GWHAAZE00000009CDS2189878021898842-
GWHAAZE00000009CDS2189859921898673-
GWHAAZE00000009CDS2189747521897553-
GWHAAZE00000009CDS2189728721897387-
GWHAAZE00000009CDS2189716121897199-
GWHAAZE00000009CDS2189670021896816-
GWHAAZE00000009CDS2189615021896221-
GWHAAZE00000009CDS2189585221895938-
GWHAAZE00000009CDS2189538621895439-
Transcript Sequence

Network for GWHGAAZE029419

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07992.15Pyr_redox_2914263.00E-58
PF02852.23Pyr_redox_dim4755326.80E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00382DLD, lpd, pdhD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Propanoate metabolismmap00640
Glycine, serine and threonine metabolismmap00260
Valine, leucine and isoleucine degradationmap00280
Lysine degradationmap00310
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0045454biological_processcell redox homeostasis
GO:0016491molecular_functionoxidoreductase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding
GO:0016668molecular_functionoxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.235
SRR3591706second leaf16.333
SRR3591707mature leaf1.434
SRR3591708Shoot apex18.721
SRR3591709Stem3.785
SRR3591710White floral bud6.833
SRR3591711White flower2.546
SRR3591712Green floral bud21.241
SRR3591713Yellow flower2.851
SRP173429 SRR8316895Juvenile bud stage 9.085
SRR8316896Juvenile bud stage 16.968
SRR8316897Juvenile bud stage 11.797
SRR8316894Third green stage 5.335
SRR8316900Third green stage 19.012
SRR8316901Third green stage 13.374
SRR8316898Complete white stage 2.403
SRR8316899Complete white stage 7.671
SRR8316903Complete white stage 2.597
SRR8316902Silver flowering stage0.872
SRR8316904Silver flowering stage0.975
SRR8316905Silver flowering stage0.310
SRR8316906Gold flowering stage 1.311
SRR8316907Gold flowering stage 0.787
SRR8316908Gold flowering stage 2.263
SRP132670SRR6706286Control10.418
SRR6706287Light intensity 50%12.679
SRR6706288Light intensity 20%14.772
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.769
CNS0095593Slightly white alabastrum(diploid) 26.997
CNS0095594Slightly white alabastrum(diploid) 37.469
CNS0095595Whole white alabastrum(diploid) 23.834
CNS0095596Whole white alabastrum(diploid) 34.989
CNS0095597Whole white alabastrum(diploid) 43.390
CNS0095598Silvery flower (diploied) 11.964
CNS0095599Silvery flower (diploied) 22.012
CNS0095600Silvery flower (diploied) 31.271
CNS0095601Golden flower (diploid) 10.992
CNS0095602Golden flower (diploid) 20.548
CNS0095603Golden flower (diploid) 30.719
CNS0095604Slightly white alabastrum(tetraploid) 18.411
CNS0095605Slightly white alabastrum(tetraploid) 27.348
CNS0095606Slightly white alabastrum(tetraploid) 314.387
CNS0095607Whole white alabastrum(tetraploid) 13.784
CNS0095608Whole white alabastrum(tetraploid) 24.903
CNS0095609Whole white alabastrum(tetraploid) 314.250
CNS0095610Silvery flower (tetraploid) 11.375
CNS0095611Silvery flower (tetraploid) 20.638
CNS0095612Silvery flower (tetraploid) 31.197
CNS0095613Golden flower (tetraploid) 10.277
CNS0095614Golden flower (tetraploid) 21.082
CNS0095615Golden flower (tetraploid) 30.083
CRA001975CRR073297Stem 115.728
CRR073298Stem 214.156
CRR073299Stem 313.357
CRR073300Leaf 120.720
CRR073301Leaf 216.167
CRR073302Leaf 318.467
CRR073303Juvenile bud 118.139
CRR073304Juvenile bud 211.799
CRR073305Juvenile bud 313.851
CRR073306Third green 11.576
CRR073307Third green 20.469
CRR073308Third green 31.080
CRR073309Second white 10.108
CRR073310Second white 20.834
CRR073311Second white 30.189
CRR073312Silver flowering 10.475
CRR073313Silver flowering 20.055
CRR073314Silver flowering 31.204
CRR073315Gold flowering 12.579
CRR073316Gold flowering 23.987
CRR073317Gold flowering 33.069
CRR073318Tawny withering 17.961
CRR073319Tawny withering 23.036
CRR073320Tawny withering 310.932