Gene detail

Detail information of GWHGAAZE029320

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007031026.1	1.0393E-163	Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1 [Theobroma cacao]
COG	YP_008797523.1	5E-42	protein phosphatase
Swissprot	tr\|P48490\|PP1_PHAVU	3E-162	Serine/threonine-protein phosphatase PP1
trEMBL	tr\|A0A061FAK9\|A0A061FAK9_THECC	4E-164	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT5G27840.2	9E-127	Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	18666296	18671746	-
GWHAAZE00000009	mRNA	18666296	18671746	-
GWHAAZE00000009	exon	18671734	18671746	-
GWHAAZE00000009	exon	18667934	18668493	-
GWHAAZE00000009	exon	18667042	18667233	-
GWHAAZE00000009	exon	18666296	18666325	-
GWHAAZE00000009	CDS	18671734	18671746	-
GWHAAZE00000009	CDS	18667934	18668493	-
GWHAAZE00000009	CDS	18667042	18667233	-
GWHAAZE00000009	CDS	18666296	18666325	-

Transcript Sequence
>GWHTAAZE029354 ATGATGGAGATAGGGGACATACATGGACAATACCAAGACCTGTTGAGGGCTTTTGAATACGGCGGCTTCCCTCCTGAAAAAAACTACCTCTTTCTTGGCGATTATGTTGATCGAGGCAAGCAAAGCTTGGAGACTATATGTTTACTATTGGCATACAAAATAAGATACCCCGAGCAAGTCTTCCTCTTAAGGGGAAACCACGAAGATGCGAAAATCAACCGGATTTATGGGTTCTATGACGAATGTAAAAGAAGATTTAATGTTCGGCTATGGAAAATATTCACAGACTGCTTTAATTGTTTACCTGTTGCTGCACTCATTGACGAAAAGATAATTTGCATGCATGGTGGACTCTCACCCGACTTGCAAAATTTGGAGCAAATAAATCAAATCGAAAGACCCACTGAGGTTCCGGACAGTGGGTTACTTTGTGATTTGCTTTGGTCTGACCCTGATGCTAGGATCAAGGGTTGGGCAGATAGTGATCGAGGCGTTTCGTGTACTTTTGGAGCTGATATGGTCTTTGAGTTTTTGGAGAAGAATGATCTTGATCTCATTTGCCGTGGTCACCAGGTAGTGGAGGACGGGTACGAGTTCTTTGCTAAACGAAGACTCGTCACAATATTTTCAGCTCCAAATTACGGCGGAGAGTTTGATAACGTAGGTGCTCTATTAAGTGTTGACGAATATCTAGTATGTTCTTTCGAGATATTGAAACCTCTTGATGTTAAACAATTACCAAGCGGTTCGAAGCCTCTTAAAAAGCCTCCAAAACTTGGAATGGGACATTCATGA

Network for GWHGAAZE029320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	4	192	1.30E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.798
	SRR3591706	second leaf	1.109
	SRR3591707	mature leaf	0.177
	SRR3591708	Shoot apex	0.219
	SRR3591709	Stem	1.368
	SRR3591710	White floral bud	21.630
	SRR3591711	White flower	11.754
	SRR3591712	Green floral bud	25.706
	SRR3591713	Yellow flower	16.099
SRP173429	SRR8316895	Juvenile bud stage	3.090
	SRR8316896	Juvenile bud stage	4.271
	SRR8316897	Juvenile bud stage	1.615
	SRR8316894	Third green stage	2.157
	SRR8316900	Third green stage	10.078
	SRR8316901	Third green stage	10.683
	SRR8316898	Complete white stage	3.527
	SRR8316899	Complete white stage	6.775
	SRR8316903	Complete white stage	4.885
	SRR8316902	Silver flowering stage	3.301
	SRR8316904	Silver flowering stage	4.100
	SRR8316905	Silver flowering stage	1.541
	SRR8316906	Gold flowering stage	7.320
	SRR8316907	Gold flowering stage	7.052
	SRR8316908	Gold flowering stage	8.594
SRP132670	SRR6706286	Control	5.268
	SRR6706287	Light intensity 50%	5.852
	SRR6706288	Light intensity 20%	5.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.130
	CNS0095593	Slightly white alabastrum(diploid) 2	5.691
	CNS0095594	Slightly white alabastrum(diploid) 3	7.547
	CNS0095595	Whole white alabastrum(diploid) 2	10.897
	CNS0095596	Whole white alabastrum(diploid) 3	12.596
	CNS0095597	Whole white alabastrum(diploid) 4	14.597
	CNS0095598	Silvery flower (diploied) 1	1.922
	CNS0095599	Silvery flower (diploied) 2	4.467
	CNS0095600	Silvery flower (diploied) 3	5.268
	CNS0095601	Golden flower (diploid) 1	4.161
	CNS0095602	Golden flower (diploid) 2	5.656
	CNS0095603	Golden flower (diploid) 3	5.390
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.449
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.097
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.714
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.585
	CNS0095610	Silvery flower (tetraploid) 1	3.357
	CNS0095611	Silvery flower (tetraploid) 2	2.210
	CNS0095612	Silvery flower (tetraploid) 3	1.669
	CNS0095613	Golden flower (tetraploid) 1	2.038
	CNS0095614	Golden flower (tetraploid) 2	3.870
	CNS0095615	Golden flower (tetraploid) 3	1.037
CRA001975	CRR073297	Stem 1	2.995
	CRR073298	Stem 2	3.508
	CRR073299	Stem 3	3.447
	CRR073300	Leaf 1	8.552
	CRR073301	Leaf 2	5.793
	CRR073302	Leaf 3	4.116
	CRR073303	Juvenile bud 1	5.151
	CRR073304	Juvenile bud 2	6.507
	CRR073305	Juvenile bud 3	1.589
	CRR073306	Third green 1	2.839
	CRR073307	Third green 2	2.697
	CRR073308	Third green 3	2.337
	CRR073309	Second white 1	1.439
	CRR073310	Second white 2	2.554
	CRR073311	Second white 3	1.917
	CRR073312	Silver flowering 1	4.317
	CRR073313	Silver flowering 2	5.056
	CRR073314	Silver flowering 3	3.519
	CRR073315	Gold flowering 1	1.971
	CRR073316	Gold flowering 2	0.355
	CRR073317	Gold flowering 3	0.526
	CRR073318	Tawny withering 1	5.585
	CRR073319	Tawny withering 2	5.346
	CRR073320	Tawny withering 3	1.647