Gene detail

Detail information of GWHGAAZE029231

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279397.1	0	PREDICTED: cell cycle checkpoint control protein RAD9A [Vitis vinifera]
trEMBL	tr\|D7U9W0\|D7U9W0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39524.3}
TAIR10	AT3G05480.1	1E-144	cell cycle checkpoint control protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	14407739	14412770	+
GWHAAZE00000009	mRNA	14407739	14412770	+
GWHAAZE00000009	exon	14407739	14407843	+
GWHAAZE00000009	exon	14409114	14409233	+
GWHAAZE00000009	exon	14409317	14409425	+
GWHAAZE00000009	exon	14410695	14410946	+
GWHAAZE00000009	exon	14411032	14411144	+
GWHAAZE00000009	exon	14411684	14411748	+
GWHAAZE00000009	exon	14412503	14412770	+
GWHAAZE00000009	CDS	14407739	14407843	+
GWHAAZE00000009	CDS	14409114	14409233	+
GWHAAZE00000009	CDS	14409317	14409425	+
GWHAAZE00000009	CDS	14410695	14410946	+
GWHAAZE00000009	CDS	14411032	14411144	+
GWHAAZE00000009	CDS	14411684	14411748	+
GWHAAZE00000009	CDS	14412503	14412770	+

Transcript Sequence
>GWHTAAZE029265 ATGGAGTGGAGCTTGAGTGGGAACGCACTCAAGACCTTCGCCCGTTCCATCACGTGCCTCGCACGCATCGGCAATGAACTTGCCCTTCAAGCCTCTTCTTCTCAGCTCGCATGTCACACTCTTAACTCATCAAGGTCCGCCTATCAGTCTATTACATTTAAGCCTGATTTCTTCGACGTTTTTACAATTTCTGGCACCCAAGTGCAGTGCAGCGTGCTGTTGAAGGCCATTTGTTCAGTTCTTAGGACGCCGATTGGAAGTATTGACCATTTGAGCGTGCTGTTGCCTAATCTTGATGCATCTAAAGTGCAGTGGACTTTGGACTGCAACAATGGTATGAGAAAAGCCTATTGGATTACTTGCAATGTTGAACCCGACATACAACATCTATCTCTTGATAGGAGAAGGCTACCAAGTAGCTTTGTGGTGAGACCACGCGATCTCAACAGATTATTGGCTAACTTTCAAACAACCCTTCAGGAGATTACAATAATTGCAACCGAAGCCACCTCATTACCCTCCGATTCCGCAAGTGAAATTGGCGGGAAAGCTGTTGAACTTAGAAGTTACATAGACCCAAGCAAAGACAATGATTCATCGCTACACACTCAACTATGGATAGATCCTAGTGAAGAGTTTGTACAGTATAATCACGCTGGAGACCCTGTTGATGTTACCTTTGGTGTAAAAGAGTTGAAGGCATTTGTTTCTCTCTGCGAGGGATGTGAAGTTGACATCCACTTATACTTTGAGAAAGCTGGAGAGCCTATTCTAATGGCACCAAAATTCGGTCTAGATGATGGCTCAGCTTCGAACTTTGATGCTACCCTAGTACTTGCAACAATGCTTGTATCACAGCTCCATGCAGGGCATTCTGCAGAACCTCAACCCGCAGATGTCCCAATGCACCGTGAGGCTGATCATGGGAAAGGAGCCCAAGGACAAGGGGGTCAAAGAGTGAATATTTCTGAGCATCCATCTGATCACACGAGGATTTGGTCCGAAATTTCAGGTAACTTGATTCTTCATTGA

Network for GWHGAAZE029231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04139.14	Rad9	13	282	6.00E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10994	RAD9A	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0000077	biological_process	DNA damage checkpoint
GO:0006281	biological_process	DNA repair
GO:0030896	cellular_component	checkpoint clamp complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.297
	SRR3591706	second leaf	0.312
	SRR3591707	mature leaf	0.674
	SRR3591708	Shoot apex	8.361
	SRR3591709	Stem	4.272
	SRR3591710	White floral bud	3.922
	SRR3591711	White flower	2.218
	SRR3591712	Green floral bud	5.184
	SRR3591713	Yellow flower	3.600
SRP173429	SRR8316895	Juvenile bud stage	2.849
	SRR8316896	Juvenile bud stage	3.487
	SRR8316897	Juvenile bud stage	1.468
	SRR8316894	Third green stage	0.848
	SRR8316900	Third green stage	2.001
	SRR8316901	Third green stage	2.081
	SRR8316898	Complete white stage	0.526
	SRR8316899	Complete white stage	2.194
	SRR8316903	Complete white stage	0.769
	SRR8316902	Silver flowering stage	0.580
	SRR8316904	Silver flowering stage	0.806
	SRR8316905	Silver flowering stage	0.304
	SRR8316906	Gold flowering stage	3.263
	SRR8316907	Gold flowering stage	4.751
	SRR8316908	Gold flowering stage	1.992
SRP132670	SRR6706286	Control	3.055
	SRR6706287	Light intensity 50%	2.793
	SRR6706288	Light intensity 20%	2.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.061
	CNS0095593	Slightly white alabastrum(diploid) 2	2.162
	CNS0095594	Slightly white alabastrum(diploid) 3	2.484
	CNS0095595	Whole white alabastrum(diploid) 2	2.879
	CNS0095596	Whole white alabastrum(diploid) 3	1.821
	CNS0095597	Whole white alabastrum(diploid) 4	3.370
	CNS0095598	Silvery flower (diploied) 1	2.080
	CNS0095599	Silvery flower (diploied) 2	0.739
	CNS0095600	Silvery flower (diploied) 3	1.369
	CNS0095601	Golden flower (diploid) 1	1.194
	CNS0095602	Golden flower (diploid) 2	1.517
	CNS0095603	Golden flower (diploid) 3	1.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.981
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.535
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.797
	CNS0095610	Silvery flower (tetraploid) 1	1.533
	CNS0095611	Silvery flower (tetraploid) 2	1.216
	CNS0095612	Silvery flower (tetraploid) 3	0.501
	CNS0095613	Golden flower (tetraploid) 1	0.683
	CNS0095614	Golden flower (tetraploid) 2	1.310
	CNS0095615	Golden flower (tetraploid) 3	1.030
CRA001975	CRR073297	Stem 1	6.997
	CRR073298	Stem 2	5.534
	CRR073299	Stem 3	6.144
	CRR073300	Leaf 1	5.211
	CRR073301	Leaf 2	3.807
	CRR073302	Leaf 3	2.211
	CRR073303	Juvenile bud 1	3.259
	CRR073304	Juvenile bud 2	2.010
	CRR073305	Juvenile bud 3	2.914
	CRR073306	Third green 1	0.500
	CRR073307	Third green 2	0.370
	CRR073308	Third green 3	0.769
	CRR073309	Second white 1	1.641
	CRR073310	Second white 2	1.935
	CRR073311	Second white 3	0.965
	CRR073312	Silver flowering 1	0.444
	CRR073313	Silver flowering 2	0.279
	CRR073314	Silver flowering 3	1.074
	CRR073315	Gold flowering 1	3.422
	CRR073316	Gold flowering 2	2.441
	CRR073317	Gold flowering 3	3.076
	CRR073318	Tawny withering 1	5.194
	CRR073319	Tawny withering 2	5.067
	CRR073320	Tawny withering 3	5.911