Gene detail

Detail information of GWHGAAZE029201

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010259649.1	PREDICTED: luminal-binding protein 4-like [Nelumbo nucifera]
COG	YP_003497318.1	molecular chaperone DnaK
Swissprot	tr\|Q03685\|BIP5_TOBAC	Luminal-binding protein 5 (Precursor)
trEMBL	tr\|V4TAP7\|V4TAP7_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR46641.1}
TAIR10	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	12021313	12024719	+
GWHAAZE00000009	mRNA	12021313	12024719	+
GWHAAZE00000009	exon	12021313	12021572	+
GWHAAZE00000009	exon	12022025	12022239	+
GWHAAZE00000009	exon	12022386	12023111	+
GWHAAZE00000009	exon	12023377	12023531	+
GWHAAZE00000009	exon	12023619	12023701	+
GWHAAZE00000009	exon	12024227	12024719	+
GWHAAZE00000009	CDS	12021313	12021572	+
GWHAAZE00000009	CDS	12022025	12022239	+
GWHAAZE00000009	CDS	12022386	12023111	+
GWHAAZE00000009	CDS	12023377	12023531	+
GWHAAZE00000009	CDS	12023619	12023701	+
GWHAAZE00000009	CDS	12024227	12024719	+

Transcript Sequence
>GWHTAAZE029235 TTGTTGGTGGGGATAGCTGGTCAGGAATCACAATCAAACTCGACCGTGATTGGGATTGATTTGGGGACGACATACTCGTGTGTGGGTGTGTACAGAAACGGTCGCGTGGAGATAATAGCCAACGATCAAGGGAACAGAATCACCCCATCGTGGGTAGCGTTCACAGATACGGAGCGTCTAATTGGGGAGGCTGCAAAGAATCAAGCAGCTCTCAATGCTGAACGCACCATCTTTGATGTTAAGCGTCTCATCGGAAGAAGGTTTGATGATCCAGAGGTTCAAAGAGACATGAAAATGCTACCATATAAAATAGTGGACAAAGAGGGAAAGCCTTACATAGAGGTGAAGATCAAAGATGGTGAGGTTAAGGTTTTTAGCCCTGAGGAGATCAGCGCTATGATACTTGGGAAGATGAAGGAGATAGCGGAGTCCTATTTGGGAAAGAAAATTAAAGACGCAGTCGTCACTGTTCCAGCTTACTTCAATGACGCCCAAAGGCAAGCCACCAAAGATGCCGGTACCATAGCTGGGCTCAACGTGGTTCGAATAATCAACGAGCCCACAGCTGCAGCAATTGCGTATGGGCTTGACAAGAAAGGGGAGGAGGAGTCGAAAATTTTAGTATTTGACCTCGGAGGTGGTACATTCGACGTGAGCATCTTGTCCATCGACGATGGAGTTTTCGAGGTTCTTTCCACAAGTGGAGACACCCACTTAGGAGGAGAAGACTTTGATCATAGGATAATGCAGTATTTCATCAAACTAATCAAGAAGAAGTACAACAAAGACATTAGTAATGATAACAAGGCTTTAGGTAAACTCAGAAAGGAGTGTGAGAGAGCCAAGAGGGCCTTGAGTAGCCAACACCAAGTGCGGGTCGAGATCGAGTCTCTTTTCGACGGGGTTGACTTTTCGGAGCCGTTGACTAGGGCGAGGTTTGAGGAATTGAACATAGATTTGTTCAAGAAGACAATGGGGCCCGTGATGAAGGCAATGAAGGATAAGGGTTTGAAGAAGAGCGAAGTGGATGAGATTGTGCTTGTTGGTGGGAGCACCAGGATTCCAAAGGTGCAAAAGCTTTTGCAGGATTACTTTGATGGGAAAGAACCAAACAAGGGTGTTAATCCGGATGAGGCTGTTGCCTATGGTGCGGCAGTTCAAGGTGGAATCCTTAGTGGCGCAGGAGGCGAAGAAACCCAAGGGATGATATTGCTTGATGTTGCTCCGTTGAGTTTGGGAATTGAAACTGTTGGCGGTGTGATGACTAAAGTGATCCCAAGAAACTCGGTTATCCCAACAAGGAAGTCTCAGGTCTTCACAACATACCAAGATCAACAAACAACTGTATCTATCAAGGTGTATGAAGGTGAAAGGAGCTTGACTAAAGATTGTCACGAACTTGGACGCTTTGAATTATCTGGAATTCCTCCAGCTCCGAGGGGAGTGCCTCAAATAGAGGTGACATTCGAGGTAGACGCTAATGGAATACTACATGTAAAGGCAGCGGACAAGGCTGCAAAGAAGTCGCAATCCATAACCATAAGTAACGAGAAGGGGCGTTTGAGTAAAGAGGAGATTGAGCAAAAGGTGAAAGAAGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGTGAAAGAAAGAATCGATGCCAAGAACAGCCTCGAGACTTACATTTACAACATGAAGAACACCATTAATGACAAGCTGGGTGATAAGATCAGTGGTGACGATAAAGAGAAGATTGTGAGCGCACTAAATGAGGGTCTTGAATGGTTGGAAAATGAGAGCCAAGATGCAGAGAAAGAAGATTTTGAAGATAAGATGAAGGAGATTGAAGCCGTCTGTAATCCTCTTATAAAACAGGCTTATGATAATGATAATGGTGGCGGTTATGAAGATGAAGATGAAGACGAAGAGCCCAATGATGAGTTATAA

Network for GWHGAAZE029201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	16	622	2.00E-260

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09490	HSPA5, BIP	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.170
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.309
	SRR3591710	White floral bud	0.079
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.204
	SRR3591713	Yellow flower	49.040
SRP173429	SRR8316895	Juvenile bud stage	0.312
	SRR8316896	Juvenile bud stage	0.370
	SRR8316897	Juvenile bud stage	0.078
	SRR8316894	Third green stage	0.112
	SRR8316900	Third green stage	0.404
	SRR8316901	Third green stage	0.339
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.123
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.070
SRP132670	SRR6706286	Control	1.424
	SRR6706287	Light intensity 50%	0.956
	SRR6706288	Light intensity 20%	0.722
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.407
	CNS0095593	Slightly white alabastrum(diploid) 2	0.268
	CNS0095594	Slightly white alabastrum(diploid) 3	1.530
	CNS0095595	Whole white alabastrum(diploid) 2	0.068
	CNS0095596	Whole white alabastrum(diploid) 3	0.085
	CNS0095597	Whole white alabastrum(diploid) 4	0.147
	CNS0095598	Silvery flower (diploied) 1	0.318
	CNS0095599	Silvery flower (diploied) 2	0.065
	CNS0095600	Silvery flower (diploied) 3	0.207
	CNS0095601	Golden flower (diploid) 1	1.317
	CNS0095602	Golden flower (diploid) 2	10.334
	CNS0095603	Golden flower (diploid) 3	10.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.239
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.347
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.459
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.774
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.090
	CNS0095612	Silvery flower (tetraploid) 3	0.189
	CNS0095613	Golden flower (tetraploid) 1	0.212
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	20.076
CRA001975	CRR073297	Stem 1	0.278
	CRR073298	Stem 2	0.251
	CRR073299	Stem 3	0.450
	CRR073300	Leaf 1	0.082
	CRR073301	Leaf 2	0.203
	CRR073302	Leaf 3	0.159
	CRR073303	Juvenile bud 1	0.036
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.137
	CRR073306	Third green 1	0.101
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.165
	CRR073309	Second white 1	0.025
	CRR073310	Second white 2	0.056
	CRR073311	Second white 3	0.051
	CRR073312	Silver flowering 1	0.338
	CRR073313	Silver flowering 2	1.270
	CRR073314	Silver flowering 3	0.279
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.196
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.050