Gene detail

Detail information of GWHGAAZE029181

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	1.8608E-108	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	7E-109	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	4E-78	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	9715171	9725194	-
GWHAAZE00000009	mRNA	9715171	9725194	-
GWHAAZE00000009	exon	9725051	9725194	-
GWHAAZE00000009	exon	9723032	9723258	-
GWHAAZE00000009	exon	9721521	9721756	-
GWHAAZE00000009	exon	9715997	9716211	-
GWHAAZE00000009	exon	9715171	9715425	-
GWHAAZE00000009	CDS	9725051	9725194	-
GWHAAZE00000009	CDS	9723032	9723258	-
GWHAAZE00000009	CDS	9721521	9721756	-
GWHAAZE00000009	CDS	9715997	9716211	-
GWHAAZE00000009	CDS	9715171	9715425	-

Transcript Sequence
>GWHTAAZE029215 ATGTCTGGTAAAAGCAATTATGCAACACTTTGGCTTGCTCTCTCTGGATCTGCAAGGTCAAATGGGGTGCTAAATGCTGGATATATTTGCTTTCAGACTATGCACCGAGCTTATGATGCTGTCTTTGTTAATAAGCGATATTACTTGGCAGTGCAGGTTCTTATCGCGGGAGCTTTGCGTTCTATTTGTGTTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGGCGTTCTGTGGAGGAAACTAGGCTGTGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCAGAGTCACTATTGGTATGTTGGTATCTTCTTCGCCTGGTCCATGTCATTTTCTGTCTTTTGGGTTTTTAAGATATTTCCAGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGTTCAATCATCTACTATGGCTACTTAAGGAGGTTTTTCTCTCACTTGGTTTCCGAGCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGACAGAGTCAAGATCAAAAAGTGAATCTGTTTTAGAGAAAGAAACTACTAAAATACGTGAAGAAGATCATGTTCTGAGACGGAGGAAACAGAATATAAAAGGAGAGGATCCTGCAACGCTTTCACTCGATAATGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTGTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCACAGCATTTTTTGTCATGCATGTGCAGGTCAGCCTCCAACTTTATCTTATATGTGTTATTGTTATGGTTGTGTTATTTGAGTTGAATTGGTGTGTCATATGCTTGTCCAAAATGGAAATAATGTTACAAACTGGTAATGAAATTTTACAGGTTTCGACTCGGTTCGTATCGTCAAGCCCTCCTCTCTACTGGTTCGCCTCTTACGTGATGGTACATCCTAGTAGTAAAAGTAAGATGTGGGGATATTTTATCTGGGCCTACTGCGCGGCCTATATCCTTCTCGGCAGTATACTCTTCCCCAACTTCTATCCTTTCACTTGA

Network for GWHGAAZE029181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	2	263	5.00E-45
PF04188.14	Mannosyl_trans2	301	358	2.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.760
	SRR3591706	second leaf	2.226
	SRR3591707	mature leaf	1.553
	SRR3591708	Shoot apex	2.650
	SRR3591709	Stem	2.398
	SRR3591710	White floral bud	1.466
	SRR3591711	White flower	1.016
	SRR3591712	Green floral bud	1.506
	SRR3591713	Yellow flower	1.086
SRP173429	SRR8316895	Juvenile bud stage	3.621
	SRR8316896	Juvenile bud stage	6.626
	SRR8316897	Juvenile bud stage	2.179
	SRR8316894	Third green stage	2.123
	SRR8316900	Third green stage	4.956
	SRR8316901	Third green stage	5.377
	SRR8316898	Complete white stage	2.292
	SRR8316899	Complete white stage	4.852
	SRR8316903	Complete white stage	2.944
	SRR8316902	Silver flowering stage	1.372
	SRR8316904	Silver flowering stage	1.630
	SRR8316905	Silver flowering stage	1.117
	SRR8316906	Gold flowering stage	2.306
	SRR8316907	Gold flowering stage	2.853
	SRR8316908	Gold flowering stage	1.496
SRP132670	SRR6706286	Control	2.932
	SRR6706287	Light intensity 50%	3.056
	SRR6706288	Light intensity 20%	3.875
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.920
	CNS0095593	Slightly white alabastrum(diploid) 2	4.510
	CNS0095594	Slightly white alabastrum(diploid) 3	3.683
	CNS0095595	Whole white alabastrum(diploid) 2	4.641
	CNS0095596	Whole white alabastrum(diploid) 3	5.462
	CNS0095597	Whole white alabastrum(diploid) 4	5.544
	CNS0095598	Silvery flower (diploied) 1	3.686
	CNS0095599	Silvery flower (diploied) 2	3.261
	CNS0095600	Silvery flower (diploied) 3	2.982
	CNS0095601	Golden flower (diploid) 1	3.528
	CNS0095602	Golden flower (diploid) 2	2.655
	CNS0095603	Golden flower (diploid) 3	3.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.865
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.793
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.559
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.510
	CNS0095610	Silvery flower (tetraploid) 1	4.511
	CNS0095611	Silvery flower (tetraploid) 2	5.287
	CNS0095612	Silvery flower (tetraploid) 3	5.922
	CNS0095613	Golden flower (tetraploid) 1	2.308
	CNS0095614	Golden flower (tetraploid) 2	4.080
	CNS0095615	Golden flower (tetraploid) 3	2.867
CRA001975	CRR073297	Stem 1	3.894
	CRR073298	Stem 2	2.219
	CRR073299	Stem 3	1.456
	CRR073300	Leaf 1	3.158
	CRR073301	Leaf 2	2.750
	CRR073302	Leaf 3	1.234
	CRR073303	Juvenile bud 1	1.663
	CRR073304	Juvenile bud 2	2.574
	CRR073305	Juvenile bud 3	1.635
	CRR073306	Third green 1	1.126
	CRR073307	Third green 2	0.199
	CRR073308	Third green 3	0.748
	CRR073309	Second white 1	1.093
	CRR073310	Second white 2	0.824
	CRR073311	Second white 3	0.937
	CRR073312	Silver flowering 1	0.647
	CRR073313	Silver flowering 2	1.196
	CRR073314	Silver flowering 3	0.868
	CRR073315	Gold flowering 1	0.582
	CRR073316	Gold flowering 2	1.653
	CRR073317	Gold flowering 3	0.684
	CRR073318	Tawny withering 1	2.033
	CRR073319	Tawny withering 2	2.684
	CRR073320	Tawny withering 3	2.596