Gene detail

Detail information of GWHGAAZE029105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO71433.1	6.4039E-138	hypothetical protein CISIN_1g020187mg [Citrus sinensis]
COG	YP_003125181.1	2E-51	chitinase
Swissprot	tr\|P06215\|CHIT_PHAVU	2E-140	Endochitinase (Precursor)
trEMBL	tr\|A0A067FVP8\|A0A067FVP8_CITSI	2E-138	Uncharacterized protein {ECO:0000313\|EMBL:KDO71433.1}
TAIR10	AT3G12500.1	5E-98	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	7276081	7277658	-
GWHAAZE00000009	mRNA	7276081	7277658	-
GWHAAZE00000009	exon	7276081	7276393	-
GWHAAZE00000009	exon	7276928	7277081	-
GWHAAZE00000009	exon	7277187	7277658	-
GWHAAZE00000009	CDS	7277187	7277658	-
GWHAAZE00000009	CDS	7276928	7277081	-
GWHAAZE00000009	CDS	7276081	7276393	-

Transcript Sequence
>GWHTAAZE029139 ATGCCTCTTGTACTTACAAATTTCATATTACTGGTGCTACTACTTATAGGCGGTGCCTCAGCAGAGCAATGTGGTCGCCAAGCTGGTGGTGCACTCTGCCCGGGTGGGCTTTGCTGCAGCGAAAACGGGTGGTGCGGCAACACTGCCCCTTGGTGCACCCCTCCCGGCTGCCAGAGCCAATGCTGGGGCTCTCCTTCGCCTCCACCACCCACTGGACCACCACCACCTCCCACTCCTCTTCCTCCCCCAAGTCCTAGTGGCGGGGGCATCTCCGACATCATTAGCCGCGAGCTGTTCGATGAAATGCTCAAGCACCGCAATGACCCCCGTTGCTACGCGGTAGGATTTTATACTTACGATGCTTTTGTAACTGCGGCCGCGTCTTTTCCTGATTTTGGAACAACTGGTGACAACGCTACGCGTCAAAGGGAAATTGCTGCTTTTCTTGGCCAAACTTCTCATGAAACTACTGGGGGTTGGCCTGAAGCTGATGATGGCCCATACGCTTGGGGGTATTGCTTTGTTAGAGAAGTTTCGCCCGATGGGAATTGTTGTGTTCAAAACGATCAGTACCCGTGTGCTCCAGGTCAAACATATTGTGGCCGAGGTCCCATTCAAATTTCATACAACTACAATTACGGGCTTTGTGGAGACGCTATAGGCGAGGATCTACTTAACAATCCAGATTTGGTAGCTACTGATGCAGTTATTTCATTTAAGACAGCAATTTGGTTCTGGATGACCGAACAACGTCCGAAGCCGTCGTGCCATGATGTTGTTATAGGAAGTTGGACCCCATCTGTTGTTGACGTAGCAGCCGGCCGTCTTCCAGGGTATGGTGTTATCACAAACATTATAAATGGCGGCCTTGAATGTGGGATTGGTCCAAATTCCTATGTTGAAGACCGTATTGGATTCTATAAAAGGTATTGTTGTTAG

Network for GWHGAAZE029105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	23	61	2.90E-11
PF00182.20	Glyco_hydro_19	93	311	2.70E-120

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.017
	SRR3591706	second leaf	26.477
	SRR3591707	mature leaf	183.896
	SRR3591708	Shoot apex	6.799
	SRR3591709	Stem	0.102
	SRR3591710	White floral bud	9.801
	SRR3591711	White flower	27.071
	SRR3591712	Green floral bud	4.988
	SRR3591713	Yellow flower	6.521
SRP173429	SRR8316895	Juvenile bud stage	0.428
	SRR8316896	Juvenile bud stage	0.232
	SRR8316897	Juvenile bud stage	0.057
	SRR8316894	Third green stage	0.134
	SRR8316900	Third green stage	0.173
	SRR8316901	Third green stage	0.498
	SRR8316898	Complete white stage	0.446
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.082
	SRR8316902	Silver flowering stage	0.069
	SRR8316904	Silver flowering stage	0.236
	SRR8316905	Silver flowering stage	0.146
	SRR8316906	Gold flowering stage	0.046
	SRR8316907	Gold flowering stage	0.362
	SRR8316908	Gold flowering stage	0.051
SRP132670	SRR6706286	Control	0.537
	SRR6706287	Light intensity 50%	0.280
	SRR6706288	Light intensity 20%	0.291
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.073
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.009
	CNS0095596	Whole white alabastrum(diploid) 3	0.015
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.513
	CNS0095599	Silvery flower (diploied) 2	0.294
	CNS0095600	Silvery flower (diploied) 3	0.175
	CNS0095601	Golden flower (diploid) 1	0.117
	CNS0095602	Golden flower (diploid) 2	0.019
	CNS0095603	Golden flower (diploid) 3	0.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.136
	CNS0095611	Silvery flower (tetraploid) 2	0.644
	CNS0095612	Silvery flower (tetraploid) 3	0.236
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.092
	CNS0095615	Golden flower (tetraploid) 3	0.057
CRA001975	CRR073297	Stem 1	0.613
	CRR073298	Stem 2	0.487
	CRR073299	Stem 3	1.312
	CRR073300	Leaf 1	0.091
	CRR073301	Leaf 2	0.134
	CRR073302	Leaf 3	0.159
	CRR073303	Juvenile bud 1	0.012
	CRR073304	Juvenile bud 2	0.409
	CRR073305	Juvenile bud 3	0.012
	CRR073306	Third green 1	0.162
	CRR073307	Third green 2	0.174
	CRR073308	Third green 3	0.434
	CRR073309	Second white 1	0.195
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.060
	CRR073312	Silver flowering 1	0.253
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.124
	CRR073315	Gold flowering 1	0.086
	CRR073316	Gold flowering 2	0.015
	CRR073317	Gold flowering 3	0.296
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.009