Gene detail

Detail information of GWHGAAZE029099

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18619.1	0	unnamed protein product [Coffea canephora]
COG	YP_004775215.1	1E-69	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A068VDH9\|A0A068VDH9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_259 {ECO:0000313\|EMBL:CDP18619.1}
TAIR10	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	7001722	7005615	+
GWHAAZE00000009	mRNA	7001722	7005615	+
GWHAAZE00000009	exon	7001722	7004851	+
GWHAAZE00000009	exon	7005311	7005615	+
GWHAAZE00000009	CDS	7001722	7004851	+
GWHAAZE00000009	CDS	7005311	7005615	+

Transcript Sequence
>GWHTAAZE029133 ATGTACATCAAAACTGACACCATGGGTTCTCTGGCCTTTGAAAAGTATCTCTTCATTGTATCATTTGTCCTAGTTGTTGTACTATTTTCCCCACCCAATATTGCTTCTTCTTCCATTGAAGAAGCAAATGCTTTGCTTCAATGGAAATCCACCCTTCAAAGAATTCCCAAATCTATGCAATCCTCTTGGTCTCTTCTTCCTCATAAATCCACAAATTCTTCTTCAAATCGAAATACAAGTGTGATTCCATGCACGTGGTTTGGAGTCTCTTGCAATGGTGAAGGAAGCGTAAATCGATTGAACCTTTCGGAGTTTGATATAAAAGGTACGCTTTACAACCTTTCTTTCAAATCGTTCCCCAATCTCGAGTACATTGATCTCCAAAAAAATAAACTTTTCGGTACCATCCCACCTCAAATAAGTTCCCTCTCTAAACTCGTATATCTCGATTTGTCTGCTAATAATTTTGTTGGTATAATTCCACCTGAAATATGCTTGCTCACTAGTCTTGAAGCTCTCAGTTTGTTTAAAAATCAGTTAAATGGCTCAATTCCTCATGACATAGGTAGACTAAAGTCTCTTAATGCCCTCGGATTGTATATGAATAATCTAGACGGTCCAATTCCCTCTTCAATTGGCAATTTGAGCAACTTGGCTTATTTATATCTATACAAAAATAAGCTCTCCAGTACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGCGATCGGATTAAGCAACAACCTTTTATTTGGTTCCATTCCGTCAAGTTTCGGGAACTTGATTAATCTAACAGAGCTCACCCTATTCAATAACTGGTTAACTGGCTCCACTCCCCTGGAACTAGGGAACTTGAAATTACTCATGAGTCTGGCCCTGAGTACAAACAATCTTTCTGGATCAATTCCGCCATCGTTAGGTGATCTCAAATCCTTGAGTTATCTATCTTTTTTCACTAATCAGCTTTCAGGTCCAATTCCCTCTTCTATTGGCAAATTGAGCAACTTGGCTTATTTATATCTGCATGAAAATAAGCTTTCAGGTACCATTCCTCCTGAAATCGGGAATCTCACCAATGTTGTTAAGATCACCTTAAGCGATAACTTTCTATTTGGTTCCATTCCATCAAGTTTTGGAAAATTGAGTAACCTAACCTTGCTTGACCTATTTAGTAATCAGTTAACTGGCTCTATTCCTCCAGAACTAGGGAGCTTGAAATTACTCGAGCGGTTGTCCCTTCACATAAACAATCTTTCTGGATCAATTCCACCATCGTTAGGTGATCTAAAATCCTTGGGTTATTTATATCTCATCAAAAATAAGCTCTTGGGTACCATTCCTCCTTCACTTGGAAACCTCACTAATTTAAAAAAGTTGTCCCTTGGTGACAACCAACTTTCGGGTCTTGTCCCACAACAGTTGGGAAGGCTTGAATTAGTTGATCTCGTACTAGATGAGAATATGTTATTCGGTTATTTTCCAAATGAGATATGCAATGGTGGAAAACTTCAACATTTGACTATTAGCTACAATAATTTTGTTGGTCCAATTCCTAAAAGCTTGAGAAACTGCTCGAGCTTAATCAGAGCCCGCCTCGACGGAAACCAATTCACTGGAAACATATCTGAAGTTTTCGGTGTCTATCCCAACTTGAATTCGATGTATTTAAGTGACAACAAATTATATGGCCATCTTTCTGATATTTGGGGCAAGTGTAAAAAGTTAAAAGATTTGCAAATTGCGAGGAACAATATCACAGGTGGCATACCATTAGAGTTTGGCAGTTCAAATTTAGTTGTACTTGATATTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAGCTTGGTAAATTGAAGCAGATGTTGAGGTTAATTTTGAGCGATAACCAATTTTTTGGCAATATTCCTCAAGAACTCGGATCCCTAACTGAGTTGTCGGAGCTCGATTTGTCCAAAAACTTATTAAGTGGGTCCATACCAGCAAATCTTTCAAATTGCTTGAATCTGTTTAATTTGAGCTTGAGTGAAAATAATCTTAGCCAAGATATTCCGGTGGAGATGACGAAGTTATTCCACTTGTCGATTCTCGATTTGAGTGGGAACTCACTAACAGGAGAGATTCCATATCAAATCAAAAGTTTGCAGAGTTTAGAGAAGTTAAATCTTTCCCGCAATAAACTCTCAGGTGAAATACCGAATTCTTTTAATGATATGACTGCTTTGTTGTATATTGATATATCCTACAATGAGCTTTATGGTCCTATCCCAAAAAGCCCAATTTTTGCAAATGCGTCTATACAAGTATTGCGAGGGAACAAAGGTTTGTGCGGTAACGTTAAAGGATTGCAGCATTGTGCAAATCCTTCTGCGGGGTTAAGGCATAAACATATAATGAGCCATAAACTCATTCTCATAGTCGTACTCCCTCTCGTTGTATCCTTTTTACTTCTTTGTGCCTTCATTTTATTCGTCATCACCTCTGACCGACGAAGAAGAAGAAGAAAGTCAAAAGTAGAGGAAATGGATGCACAAGATCAAAACATATTTTGGATATTAAATTTCGATGGAAAGGCAATGTATAAAGAAATCTTGAAAGCCACTAATGATTTTGATTTCCAGTATTGTATTGGACAAGGAGGATTCGGAGTTGTCTATAAAGCAGAAATGCAATCGGGTATTGTTTTAGCTGTGAAGAAACTTCACTCATCATCGGAAATAGTTGACCTTAAAGCTTTTGAGAATGAGGTAAATGCATTGACAGAAATAAGGCACCGAAACATAGTAAAGCTTCATGGATTTTGTTCACATGCTCGAAATTCATTTTTGGTTTATGACTACCTTGAAAGAGGTAGCTTAGCCGAAATCTTGAGCAATGAAGAAGAAGCAAGGAAATTGGATTGGCAAAAAAGGGTGAACATTATTAAGGGGGTTGCTCATGCTTTGTCTTACATGCACCATGATTGTTCTCCCCCAATTATTCATCGAGACATATCGAGCAAGAATATTTTGCTTGATTCTGAGTATGAGGCATGCGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGATAGACTCATCAAACTGGACTACACTCGCTGGAACGCGTGGATATATTGCACCAGAGTTTGCTTACACAATGAAGGTAACGGAAAAGTGTGATGTGTATAGCTTTGGTGTACTATCTTTGGAAGTGATTAAAGGAAAGCATCCGGGTGATTACATTGCTTTGCTATCATCTCAATCAATGGAAGACAATCAACTTCAAGATGCATTGGACGAACAACTTCCACCTCCTTCCCTTGAAGAACATAAGCTATTGCTATCCATCATAATACTAGCAAAAGCATGTTTAAATAATGATCCTCAATCAAGGCCAACAATGCACGATGTTTCTAAGATGCTATCAGGCAAAAGATCTATTCCTTAA

Network for GWHGAAZE029099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	40	92	2.10E-05
PF13855.7	LRR_8	120	180	4.60E-07
PF13855.7	LRR_8	695	754	1.70E-09
PF00069.26	Pkinase	878	1134	2.20E-45

Protein Sequence

>GWHPAAZE029117
MYIKTDTMGSLAFEKYLFIVSFVLVVVLFSPPNIASSSIEEANALLQWKSTLQRIPKSMQSSWSLLPHKSTNSSSNRNTSVIPCTWFGVSCNGEGSVNRLNLSEFDIKGTLYNLSFKSFPNLEYIDLQKNKLFGTIPPQISSLSKLVYLDLSANNFVGIIPPEICLLTSLEALSLFKNQLNGSIPHDIGRLKSLNALGLYMNNLDGPIPSSIGNLSNLAYLYLYKNKLSSTIPPEIGNLTNLVAIGLSNNLLFGSIPSSFGNLINLTELTLFNNWLTGSTPLELGNLKLLMSLALSTNNLSGSIPPSLGDLKSLSYLSFFTNQLSGPIPSSIGKLSNLAYLYLHENKLSGTIPPEIGNLTNVVKITLSDNFLFGSIPSSFGKLSNLTLLDLFSNQLTGSIPPELGSLKLLERLSLHINNLSGSIPPSLGDLKSLGYLYLIKNKLLGTIPPSLGNLTNLKKLSLGDNQLSGLVPQQLGRLELVDLVLDENMLFGYFPNEICNGGKLQHLTISYNNFVGPIPKSLRNCSSLIRARLDGNQFTGNISEVFGVYPNLNSMYLSDNKLYGHLSDIWGKCKKLKDLQIARNNITGGIPLEFGSSNLVVLDISSNNLVGEIPKELGKLKQMLRLILSDNQFFGNIPQELGSLTELSELDLSKNLLSGSIPANLSNCLNLFNLSLSENNLSQDIPVEMTKLFHLSILDLSGNSLTGEIPYQIKSLQSLEKLNLSRNKLSGEIPNSFNDMTALLYIDISYNELYGPIPKSPIFANASIQVLRGNKGLCGNVKGLQHCANPSAGLRHKHIMSHKLILIVVLPLVVSFLLLCAFILFVITSDRRRRRRKSKVEEMDAQDQNIFWILNFDGKAMYKEILKATNDFDFQYCIGQGGFGVVYKAEMQSGIVLAVKKLHSSSEIVDLKAFENEVNALTEIRHRNIVKLHGFCSHARNSFLVYDYLERGSLAEILSNEEEARKLDWQKRVNIIKGVAHALSYMHHDCSPPIIHRDISSKNILLDSEYEACVSDFGTAKILKIDSSNWTTLAGTRGYIAPEFAYTMKVTEKCDVYSFGVLSLEVIKGKHPGDYIALLSSQSMEDNQLQDALDEQLPPPSLEEHKLLLSIIILAKACLNNDPQSRPTMHDVSKMLSGKRSIP

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.268
	SRR3591706	second leaf	0.627
	SRR3591707	mature leaf	7.176
	SRR3591708	Shoot apex	0.740
	SRR3591709	Stem	0.646
	SRR3591710	White floral bud	0.240
	SRR3591711	White flower	0.546
	SRR3591712	Green floral bud	0.308
	SRR3591713	Yellow flower	0.043
SRP173429	SRR8316895	Juvenile bud stage	2.438
	SRR8316896	Juvenile bud stage	4.289
	SRR8316897	Juvenile bud stage	1.439
	SRR8316894	Third green stage	1.410
	SRR8316900	Third green stage	2.106
	SRR8316901	Third green stage	2.731
	SRR8316898	Complete white stage	0.283
	SRR8316899	Complete white stage	5.293
	SRR8316903	Complete white stage	0.810
	SRR8316902	Silver flowering stage	0.147
	SRR8316904	Silver flowering stage	0.101
	SRR8316905	Silver flowering stage	0.008
	SRR8316906	Gold flowering stage	0.047
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.370
SRP132670	SRR6706286	Control	0.247
	SRR6706287	Light intensity 50%	0.492
	SRR6706288	Light intensity 20%	0.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.442
	CNS0095593	Slightly white alabastrum(diploid) 2	0.721
	CNS0095594	Slightly white alabastrum(diploid) 3	0.763
	CNS0095595	Whole white alabastrum(diploid) 2	0.384
	CNS0095596	Whole white alabastrum(diploid) 3	0.292
	CNS0095597	Whole white alabastrum(diploid) 4	0.510
	CNS0095598	Silvery flower (diploied) 1	1.165
	CNS0095599	Silvery flower (diploied) 2	1.379
	CNS0095600	Silvery flower (diploied) 3	0.904
	CNS0095601	Golden flower (diploid) 1	1.142
	CNS0095602	Golden flower (diploid) 2	0.984
	CNS0095603	Golden flower (diploid) 3	1.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.787
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.756
	CNS0095610	Silvery flower (tetraploid) 1	0.198
	CNS0095611	Silvery flower (tetraploid) 2	0.185
	CNS0095612	Silvery flower (tetraploid) 3	0.078
	CNS0095613	Golden flower (tetraploid) 1	0.060
	CNS0095614	Golden flower (tetraploid) 2	0.053
	CNS0095615	Golden flower (tetraploid) 3	0.062
CRA001975	CRR073297	Stem 1	0.777
	CRR073298	Stem 2	0.859
	CRR073299	Stem 3	0.125
	CRR073300	Leaf 1	1.141
	CRR073301	Leaf 2	0.584
	CRR073302	Leaf 3	0.196
	CRR073303	Juvenile bud 1	0.221
	CRR073304	Juvenile bud 2	0.093
	CRR073305	Juvenile bud 3	0.499
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.012
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.577
	CRR073316	Gold flowering 2	3.967
	CRR073317	Gold flowering 3	1.034
	CRR073318	Tawny withering 1	0.039
	CRR073319	Tawny withering 2	0.124
	CRR073320	Tawny withering 3	0.026