Gene detail

Detail information of GWHGAAZE029041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624361.1	1.49823E-67	PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LNT9\|ASK4_ARATH	1E-61	SKP1-like protein 4
trEMBL	tr\|A5C7K8\|A5C7K8_VITVI	3E-67	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73136.1}
TAIR10	AT1G20140.1	2E-49	SKP1-like 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	3074123	3076226	-
GWHAAZE00000009	mRNA	3074123	3076226	-
GWHAAZE00000009	exon	3075948	3076226	-
GWHAAZE00000009	exon	3075513	3075708	-
GWHAAZE00000009	exon	3074123	3074546	-
GWHAAZE00000009	CDS	3075948	3076226	-
GWHAAZE00000009	CDS	3075535	3075708	-
GWHAAZE00000009	three_prime_UTR	3075513	3075534	-
GWHAAZE00000009	three_prime_UTR	3074123	3074546	-

Transcript Sequence
>GWHTAAZE029075 ATGTCTACCGGAAAGATGATCGTGCTGAGGAGCAAAGAGAACGAGACCTTTGAGGTGGAGGAGGCGGTTGCGGTTATGTCACAGACCCTCAAGCGCATGATCGAGGATGATACCTCCGCCGATATCTCCATTTCTCTCCCCAAAGTCACAAGCAAGATCCTCGCCAAAGTCATCGAGTACTGCAAGAAGCACGTTGAAACACCCGAGTCTGAGGAGTTGAAGAGCTTTGATGCTGACTTTGTTAAAGTCGATCAGCAGACTCTGTTCGATATCATCATTGCAGCACACGATCTGAACATCAAGAGCTTAGTGGATCTGACATGTCAAACTGTGGCGGACATGCTCAAGGGATGTACACCTGAGCAGATTTCGAAGACGTTCAACATCGAGAATAATTTCGCCCCAGAGGAAGAAGCGCAGGTCCGCCGGGAGAATCCCTGGGCATTTGAGTGATCAAACAATGCAAGTCTTTGCTAACTTCAGTAGTCTTGTTTTATAAACTTCAATCCTGCGGCGAGTGGACGAGGATTTACTGTTGGTATTGGTGTAGTGAGATTCAAGCGGAGGGTTTTTTGTAGGGTTTAGTAGATGGAGCAACTATATGAACGCTCGGGGGGTAGCAGAATTGCATGCAGGTTTTGAGGATCTTCGTTTTCTACTCCGGCGGGATTTCAGGATATTGAAGTGGAAGGGGACACTTTAGTAGTCTGTATTCTTTCTTTTGCTCAATCTTAGTATGTCTTGTTCCTTTCCTTTTATTAAACGGATGAGCCAGATTTGCTATGAATATTTTAGACGACGACCTTTGGCGTGATTCGTGAAGATCCCCCCCGTTGTGGTTGGAAGAGTTGTTGAACTTTGATGTAATTGAGATTTGCTATGAATATTTTAGACAACGA

Network for GWHGAAZE029041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03931.16	Skp1_POZ	5	65	1.10E-22
PF01466.20	Skp1	101	148	1.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	SKP1

KEGG pathway

KO	Enzyme	pathway	mapID
K03094	SKP1, CBF3D	Protein processing in endoplasmic reticulum	map04141
		Ubiquitin mediated proteolysis	map04120
		Wnt signaling pathway	map04310
		Hedgehog signaling pathway - fly	map04341
		TGF-beta signaling pathway	map04350
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Oocyte meiosis	map04114
		Circadian rhythm	map04710

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.395
	SRR3591706	second leaf	1.045
	SRR3591707	mature leaf	1.508
	SRR3591708	Shoot apex	4.778
	SRR3591709	Stem	11.303
	SRR3591710	White floral bud	7.619
	SRR3591711	White flower	9.238
	SRR3591712	Green floral bud	5.486
	SRR3591713	Yellow flower	1.721
SRP173429	SRR8316895	Juvenile bud stage	17.827
	SRR8316896	Juvenile bud stage	63.320
	SRR8316897	Juvenile bud stage	21.721
	SRR8316894	Third green stage	26.538
	SRR8316900	Third green stage	61.076
	SRR8316901	Third green stage	47.850
	SRR8316898	Complete white stage	27.165
	SRR8316899	Complete white stage	55.265
	SRR8316903	Complete white stage	38.722
	SRR8316902	Silver flowering stage	24.389
	SRR8316904	Silver flowering stage	25.723
	SRR8316905	Silver flowering stage	10.454
	SRR8316906	Gold flowering stage	8.988
	SRR8316907	Gold flowering stage	13.180
	SRR8316908	Gold flowering stage	8.037
SRP132670	SRR6706286	Control	71.985
	SRR6706287	Light intensity 50%	70.876
	SRR6706288	Light intensity 20%	80.865
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.213
	CNS0095593	Slightly white alabastrum(diploid) 2	39.264
	CNS0095594	Slightly white alabastrum(diploid) 3	53.361
	CNS0095595	Whole white alabastrum(diploid) 2	37.614
	CNS0095596	Whole white alabastrum(diploid) 3	33.381
	CNS0095597	Whole white alabastrum(diploid) 4	37.686
	CNS0095598	Silvery flower (diploied) 1	50.731
	CNS0095599	Silvery flower (diploied) 2	62.803
	CNS0095600	Silvery flower (diploied) 3	64.213
	CNS0095601	Golden flower (diploid) 1	63.276
	CNS0095602	Golden flower (diploid) 2	47.869
	CNS0095603	Golden flower (diploid) 3	46.763
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.682
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.978
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.101
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.333
	CNS0095610	Silvery flower (tetraploid) 1	56.839
	CNS0095611	Silvery flower (tetraploid) 2	56.352
	CNS0095612	Silvery flower (tetraploid) 3	27.008
	CNS0095613	Golden flower (tetraploid) 1	39.488
	CNS0095614	Golden flower (tetraploid) 2	28.789
	CNS0095615	Golden flower (tetraploid) 3	26.796
CRA001975	CRR073297	Stem 1	45.568
	CRR073298	Stem 2	59.166
	CRR073299	Stem 3	69.287
	CRR073300	Leaf 1	48.298
	CRR073301	Leaf 2	61.027
	CRR073302	Leaf 3	71.445
	CRR073303	Juvenile bud 1	68.020
	CRR073304	Juvenile bud 2	41.596
	CRR073305	Juvenile bud 3	63.974
	CRR073306	Third green 1	20.987
	CRR073307	Third green 2	30.456
	CRR073308	Third green 3	21.938
	CRR073309	Second white 1	18.701
	CRR073310	Second white 2	17.042
	CRR073311	Second white 3	7.810
	CRR073312	Silver flowering 1	11.482
	CRR073313	Silver flowering 2	12.841
	CRR073314	Silver flowering 3	9.502
	CRR073315	Gold flowering 1	1.662
	CRR073316	Gold flowering 2	1.912
	CRR073317	Gold flowering 3	1.819
	CRR073318	Tawny withering 1	2.657
	CRR073319	Tawny withering 2	0.526
	CRR073320	Tawny withering 3	3.082