Gene detail

Detail information of GWHGAAZE029021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP23529.1	0	hypothetical protein JCGZ_23362 [Jatropha curcas]
COG	YP_003668625.1	7E-34	mevalonate kinase
Swissprot	tr\|P46086\|KIME_ARATH	1E-172	Mevalonate kinase
trEMBL	tr\|A0A067JVG6\|A0A067JVG6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP23529.1}
TAIR10	AT5G27450.3	8E-110	mevalonate kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	2489245	2496061	-
GWHAAZE00000009	mRNA	2489245	2496061	-
GWHAAZE00000009	exon	2495935	2496061	-
GWHAAZE00000009	exon	2493738	2493981	-
GWHAAZE00000009	exon	2492874	2493127	-
GWHAAZE00000009	exon	2491646	2492059	-
GWHAAZE00000009	exon	2489245	2489354	-
GWHAAZE00000009	CDS	2495935	2496061	-
GWHAAZE00000009	CDS	2493738	2493981	-
GWHAAZE00000009	CDS	2492874	2493127	-
GWHAAZE00000009	CDS	2491646	2492059	-
GWHAAZE00000009	CDS	2489245	2489354	-

Transcript Sequence
>GWHTAAZE029055 ATGGAGGTGAGAGCAAGAGCTCCCGGAAAGATCATACTCGCCGGCGAACATGCCGTCGTTCACGGATCCGCCGCGGTCGCCGCCTCCATCGATCTCTGCACTTACGTTACTCTCAGCTTTCCCACCGATAATGACGATACACTAAGAATCCAGCTCAAGGGTATGCACCTAGAATTTGCATGGCCAATTGGAAGAATCAGAGCCGCACTTCCTGAATTGGGTGGTTGTGTTGCTTCATCACCCAAATCATGCTCACCAGAAACCCTTAAATCGATTGCATCCCTAGTTGATGAAGTGAATATTCCAGAGGCAAATTATGGACTTGCTGCTGGAGTTACAGCTTTTATTTGGCTTTACACTTCTATCCAAGGGTATAAAGCTGGGAAAGTGGTTATCACTTCAGACCTACCACTGGGCGCTGGCTTGGGATCATCTGCAGCCTTATGTGTGTCACTTTCTGCTGCCTTGGTCTCTTTGTCAGATGCTGTGCATTTAGATGTAAGCAAGCAGGATTGGTTAATGTTAGGGGAAAAGGAGCTGGAACTAGTTAACAAATGGGCTTTTGTAGGTGAACAAATCATCCATGGAAAGCCATCTGGGATAGACAACACAGTAAGCACATTCGGGAACATGATCAAGTTCAAGTCTGGTGAATTAACGCGCATTAAGTCCAATATGCCTCTAAAAATGCTCATAACAAACACTAAAGTCGGGAGGAACACAAAAGCACTAGTTGCCGGTGTTTCAGAGAGGAAATTGAGGCACCCAATTGCAATGACTAATGTGTTCACCGCCGTTGATTCTATCAGCAATGAATTGGCTACTATTATTCAGTCTCCTGCTTCTGATGATCTTGCCGTTACTGAGAAGGAAGATAAACTTGAAGAACTAATGGAAATGAGTCAAGGATTGCTCCAATGTATGGGGGTTAGTCATCCTTCTATTGAAACCGTGCTTCGAACGACGTTGAAATACAAGCTAGCTTCCAAGTTGACCGGAGCTGGTGGTGGCGGCTGTGTTTTGACGCTATTACCATCGCGTACAATTGTTGATAAAGTAATTGCCGATCTAGAAACATCCGGCTTCAGTTGTTTGATTGCCGGAATAGGAGGGAACGGCGTCGAGATTTGCTTTGGCGATTCGTCATGA

Network for GWHGAAZE029021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	129	210	2.20E-18
PF08544.14	GHMP_kinases_C	292	357	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00869	E2.7.1.36, MVK, mvaK1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0004496	molecular_function	mevalonate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.662
	SRR3591706	second leaf	32.358
	SRR3591707	mature leaf	9.625
	SRR3591708	Shoot apex	35.141
	SRR3591709	Stem	44.489
	SRR3591710	White floral bud	30.448
	SRR3591711	White flower	38.422
	SRR3591712	Green floral bud	29.721
	SRR3591713	Yellow flower	27.104
SRP173429	SRR8316895	Juvenile bud stage	18.643
	SRR8316896	Juvenile bud stage	29.802
	SRR8316897	Juvenile bud stage	14.138
	SRR8316894	Third green stage	10.809
	SRR8316900	Third green stage	35.726
	SRR8316901	Third green stage	30.348
	SRR8316898	Complete white stage	8.815
	SRR8316899	Complete white stage	36.585
	SRR8316903	Complete white stage	19.097
	SRR8316902	Silver flowering stage	6.849
	SRR8316904	Silver flowering stage	8.225
	SRR8316905	Silver flowering stage	4.103
	SRR8316906	Gold flowering stage	22.111
	SRR8316907	Gold flowering stage	18.733
	SRR8316908	Gold flowering stage	42.193
SRP132670	SRR6706286	Control	41.179
	SRR6706287	Light intensity 50%	43.589
	SRR6706288	Light intensity 20%	48.686
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.550
	CNS0095593	Slightly white alabastrum(diploid) 2	21.851
	CNS0095594	Slightly white alabastrum(diploid) 3	23.617
	CNS0095595	Whole white alabastrum(diploid) 2	18.550
	CNS0095596	Whole white alabastrum(diploid) 3	19.095
	CNS0095597	Whole white alabastrum(diploid) 4	19.451
	CNS0095598	Silvery flower (diploied) 1	19.838
	CNS0095599	Silvery flower (diploied) 2	19.172
	CNS0095600	Silvery flower (diploied) 3	17.859
	CNS0095601	Golden flower (diploid) 1	16.730
	CNS0095602	Golden flower (diploid) 2	18.164
	CNS0095603	Golden flower (diploid) 3	15.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.110
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.962
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.813
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.713
	CNS0095610	Silvery flower (tetraploid) 1	22.915
	CNS0095611	Silvery flower (tetraploid) 2	16.711
	CNS0095612	Silvery flower (tetraploid) 3	31.470
	CNS0095613	Golden flower (tetraploid) 1	16.380
	CNS0095614	Golden flower (tetraploid) 2	21.126
	CNS0095615	Golden flower (tetraploid) 3	6.324
CRA001975	CRR073297	Stem 1	29.202
	CRR073298	Stem 2	28.989
	CRR073299	Stem 3	31.253
	CRR073300	Leaf 1	38.660
	CRR073301	Leaf 2	37.869
	CRR073302	Leaf 3	40.838
	CRR073303	Juvenile bud 1	41.107
	CRR073304	Juvenile bud 2	55.706
	CRR073305	Juvenile bud 3	77.899
	CRR073306	Third green 1	19.554
	CRR073307	Third green 2	12.134
	CRR073308	Third green 3	15.841
	CRR073309	Second white 1	11.545
	CRR073310	Second white 2	12.197
	CRR073311	Second white 3	8.904
	CRR073312	Silver flowering 1	14.128
	CRR073313	Silver flowering 2	14.655
	CRR073314	Silver flowering 3	13.691
	CRR073315	Gold flowering 1	10.307
	CRR073316	Gold flowering 2	10.599
	CRR073317	Gold flowering 3	13.892
	CRR073318	Tawny withering 1	28.735
	CRR073319	Tawny withering 2	25.316
	CRR073320	Tawny withering 3	23.512