Detail information of GWHGAAZE029016


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007014261.17.657E-171Afadin/alpha-actinin-binding protein isoform 4 [Theobroma cacao]
trEMBLtr|A0A061GPU9|A0A061GPU9_THECC3E-171Afadin/alpha-actinin-binding protein isoform 4 {ECO:0000313|EMBL:EOY31880.1}
TAIR10AT5G57410.33E-125Afadin/alpha-actinin-binding protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene23794062391294-
GWHAAZE00000009mRNA23794062391294-
GWHAAZE00000009exon23912672391294-
GWHAAZE00000009exon23910272391136-
GWHAAZE00000009exon23889862389083-
GWHAAZE00000009exon23884012388522-
GWHAAZE00000009exon23882172388302-
GWHAAZE00000009exon23880562388118-
GWHAAZE00000009exon23878482387922-
GWHAAZE00000009exon23876972387762-
GWHAAZE00000009exon23875422387619-
GWHAAZE00000009exon23794062379552-
GWHAAZE00000009CDS23912672391294-
GWHAAZE00000009CDS23910272391136-
GWHAAZE00000009CDS23889862389083-
GWHAAZE00000009CDS23884012388522-
GWHAAZE00000009CDS23882172388302-
GWHAAZE00000009CDS23880562388118-
GWHAAZE00000009CDS23878482387922-
GWHAAZE00000009CDS23876972387762-
GWHAAZE00000009CDS23875422387619-
GWHAAZE00000009CDS23794062379552-
Transcript Sequence

Network for GWHGAAZE029016

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11559.9ADIP201741.70E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06085SSX2IP, ADIP Adherens junction map04520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.993
SRR3591706second leaf12.510
SRR3591707mature leaf1.081
SRR3591708Shoot apex29.815
SRR3591709Stem9.492
SRR3591710White floral bud11.092
SRR3591711White flower5.273
SRR3591712Green floral bud21.387
SRR3591713Yellow flower1.527
SRP173429 SRR8316895Juvenile bud stage 14.589
SRR8316896Juvenile bud stage 14.476
SRR8316897Juvenile bud stage 11.242
SRR8316894Third green stage 6.713
SRR8316900Third green stage 14.543
SRR8316901Third green stage 10.054
SRR8316898Complete white stage 3.431
SRR8316899Complete white stage 11.048
SRR8316903Complete white stage 3.635
SRR8316902Silver flowering stage0.844
SRR8316904Silver flowering stage1.238
SRR8316905Silver flowering stage0.116
SRR8316906Gold flowering stage 0.258
SRR8316907Gold flowering stage 0.994
SRR8316908Gold flowering stage 1.213
SRP132670SRR6706286Control9.406
SRR6706287Light intensity 50%10.359
SRR6706288Light intensity 20%13.036
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.021
CNS0095593Slightly white alabastrum(diploid) 213.543
CNS0095594Slightly white alabastrum(diploid) 39.415
CNS0095595Whole white alabastrum(diploid) 27.856
CNS0095596Whole white alabastrum(diploid) 37.925
CNS0095597Whole white alabastrum(diploid) 47.020
CNS0095598Silvery flower (diploied) 14.853
CNS0095599Silvery flower (diploied) 26.841
CNS0095600Silvery flower (diploied) 33.447
CNS0095601Golden flower (diploid) 14.295
CNS0095602Golden flower (diploid) 22.718
CNS0095603Golden flower (diploid) 32.170
CNS0095604Slightly white alabastrum(tetraploid) 115.276
CNS0095605Slightly white alabastrum(tetraploid) 216.777
CNS0095606Slightly white alabastrum(tetraploid) 330.231
CNS0095607Whole white alabastrum(tetraploid) 17.103
CNS0095608Whole white alabastrum(tetraploid) 27.831
CNS0095609Whole white alabastrum(tetraploid) 315.109
CNS0095610Silvery flower (tetraploid) 12.052
CNS0095611Silvery flower (tetraploid) 22.714
CNS0095612Silvery flower (tetraploid) 33.221
CNS0095613Golden flower (tetraploid) 10.733
CNS0095614Golden flower (tetraploid) 22.485
CNS0095615Golden flower (tetraploid) 30.103
CRA001975CRR073297Stem 126.686
CRR073298Stem 225.266
CRR073299Stem 320.806
CRR073300Leaf 119.637
CRR073301Leaf 216.505
CRR073302Leaf 313.234
CRR073303Juvenile bud 113.773
CRR073304Juvenile bud 27.878
CRR073305Juvenile bud 36.376
CRR073306Third green 12.662
CRR073307Third green 20.685
CRR073308Third green 31.921
CRR073309Second white 10.736
CRR073310Second white 21.054
CRR073311Second white 30.816
CRR073312Silver flowering 10.182
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.323
CRR073315Gold flowering 13.809
CRR073316Gold flowering 26.778
CRR073317Gold flowering 31.494
CRR073318Tawny withering 110.984
CRR073319Tawny withering 26.777
CRR073320Tawny withering 310.913