Gene detail

Detail information of GWHGAAZE028944

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81109.1	0	hypothetical protein VITISV_010435 [Vitis vinifera]
COG	YP_002492508.1	6E-17	response regulator receiver modulated metal dependent phosphohydrolase
Swissprot	tr\|P62598\|ARR12_ARATH	3E-129	Two-component response regulator ARR12
trEMBL	tr\|A5BGD4\|A5BGD4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81109.1}
TAIR10	AT2G25180.1	6E-102	response regulator 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73549125	73553382	+
GWHAAZE00000008	mRNA	73549125	73553382	+
GWHAAZE00000008	exon	73549125	73549364	+
GWHAAZE00000008	exon	73550243	73550395	+
GWHAAZE00000008	exon	73551077	73551463	+
GWHAAZE00000008	exon	73551910	73551986	+
GWHAAZE00000008	exon	73552086	73553237	+
GWHAAZE00000008	exon	73553314	73553382	+
GWHAAZE00000008	five_prime_UTR	73549125	73549222	+
GWHAAZE00000008	CDS	73549223	73549364	+
GWHAAZE00000008	CDS	73550243	73550395	+
GWHAAZE00000008	CDS	73551077	73551463	+
GWHAAZE00000008	CDS	73551910	73551986	+
GWHAAZE00000008	CDS	73552086	73553237	+
GWHAAZE00000008	CDS	73553314	73553382	+

Transcript Sequence
>GWHTAAZE028978 CAAAATAAAAAATATTTTAAAGATCTTCCTCTTCTTCTTGAAACTTGGATTTCAAATTCTACTACATCTCTGAATTTGGGGAAATAAGAAAGAAAGAAATGATAATGGAGAAGAGAGTTGATGAACAAAAGAATAATAATGATGATCAGTTTCCTGTTGGCATGAGAGTTTTGGCTGTAGATGATGACCCTACTTGCCTCATGCTCTTGGAAAATCTCCTTCGTAAATGCCAATATCACGTTACCACTACCAGCCAAGCAATCACTGCACTGAAAATGTTAAGAGAGAACAAAAACAAGTTTGATTTAGTAATCAGTGATGTCCATATGCCTGATATGGATGGATTTAAGCTACTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTCATTATGTTGTCTGCATATGGCGATAACAAGCTTGTGATGAAGGGGATTACTCACGGAGCTTGTGATTATTTGCTGAAACCTGTCCGAATTGAGGAGCTAAAGAACATCTGGCAGCACGTAATTAGGCGAAAGAAATTTGATCCCAAGGATAAGAAGGATTTTGGCAAGCCTCAAGGTGAGTCTGGTGAAGGAGAAGGGTCAATGGGAACGGGAGATTATGATCCAAACACGAAGCTCAATAGAAAAAGGAAGGACCAGAATGATGATGAGGATGAAGATCGCGATGAGAATGGAAATGAGGATCCATCGACGCAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGATTTGCACCGCAAATTTGTTGCAGCTGTTAATCATTTGGGCATTGACAAGGCTGTGCCTAAAAGAATTTTAGATTTGATGAATGTGGAAAAGCTTTCTAGAGAAAATGTTGCCAGCCATCTCCAGAAATACAGGCTTTACCTAAAAAGGATTAGCTCCGTAGCAAGCCAGCAAGCTAACATGATGGCAGCCTTAGGGAGTGCAGATTCTGCTTATATGCGAATGGCTTCTTTTAATGGTGGATTTGGAAATCTTCAAACTATGGCTGGTTCAGGGCAATTTCAGAATGCTGCTTACGGGTCCTTGTCACCAAGTAGTGTACTTAATAGACTGAACACTCCTTCTGGTATAGCTATGAATACCCTTTCTTCTTCAAGAAGGGTTCAATTAGGCCAACCTCAAAACTCCAGCAATCCTATACTTCAAGGGATGCCGATGTCTGCAGAATTTGATCAAATGCAACATAATCTAAGTGTTACTCAGATTGGAGACCTCCCTGCTACTACTAATGATACAATGGGTTCAATAGTTTACCCCGTTTCAAGTTGCTTCTCGGGTACAAAAATTAATGGCGGTAGCTCAAGCAACTCCATTTTGGGTGGCCTAAATAACCCAATTTCCCTACAAAATGGCCAAAGAAGAGTAATCTCCCAAAATCAACCTTCTGTTACAGTGAATGCAAATCCAGATTTCTCTTCTCACTTGCCAGATTTTGAAAGATGTAATGACAATTGGCCAAGTGCTCTTCAGCCATCTGAGATACAGTCACACTCTTATACATTAATCGATTCTTTGAAACAGACAACTCCAAGTGATTTAAGAAATGACATGTCTTCGATGCCCATCACCTCGGTGCCCACTCAATTCCAAGCAGCATCTATTAGCAGTATTGCTGGGCAAAATATGAATCTTGCATCGAAACAAGGGTGGGAGGACCATAATAATCGAGATGCACCTTATGATCCTCATCACTCGAATATTTTGTGTAGCTCGATGAACTCCTCAATTCCTCATTGTGGCGGTGTGGGTCCATTCAACCAGAATTTGAACCCGAGAAACGCAGTGTACGATAAGAATAACGATCTGAATTTGGTTGGGCAATCGAATTTTCTCGATCCCTTGTCCACGCAGCATAATGATGCTGAACACATGGCTTTTGAGACCGTAACAGAATTGAAGCATGGGTACATTAGAGAAGACAGGAAGCTGGGGAGCAGTTACACTCATAAAAATGTTGACTCCTTGGAAGATTTAGTGACTGTGATGATGACAAAACAGTTCTTACCGTTCGAATTCAAATCTTTATCTGAGTATGGTTTTTATCTACATGATTTTGAAGTTGAATGA

Network for GWHGAAZE028944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	24	132	3.40E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.984
	SRR3591706	second leaf	11.742
	SRR3591707	mature leaf	7.058
	SRR3591708	Shoot apex	25.940
	SRR3591709	Stem	58.696
	SRR3591710	White floral bud	25.526
	SRR3591711	White flower	48.739
	SRR3591712	Green floral bud	24.745
	SRR3591713	Yellow flower	35.561
SRP173429	SRR8316895	Juvenile bud stage	14.689
	SRR8316896	Juvenile bud stage	22.497
	SRR8316897	Juvenile bud stage	8.048
	SRR8316894	Third green stage	9.908
	SRR8316900	Third green stage	17.550
	SRR8316901	Third green stage	16.982
	SRR8316898	Complete white stage	6.435
	SRR8316899	Complete white stage	27.774
	SRR8316903	Complete white stage	10.329
	SRR8316902	Silver flowering stage	10.979
	SRR8316904	Silver flowering stage	15.339
	SRR8316905	Silver flowering stage	5.829
	SRR8316906	Gold flowering stage	21.530
	SRR8316907	Gold flowering stage	21.087
	SRR8316908	Gold flowering stage	23.406
SRP132670	SRR6706286	Control	10.403
	SRR6706287	Light intensity 50%	12.825
	SRR6706288	Light intensity 20%	13.692
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.982
	CNS0095593	Slightly white alabastrum(diploid) 2	12.127
	CNS0095594	Slightly white alabastrum(diploid) 3	12.729
	CNS0095595	Whole white alabastrum(diploid) 2	13.903
	CNS0095596	Whole white alabastrum(diploid) 3	8.671
	CNS0095597	Whole white alabastrum(diploid) 4	10.772
	CNS0095598	Silvery flower (diploied) 1	18.648
	CNS0095599	Silvery flower (diploied) 2	15.997
	CNS0095600	Silvery flower (diploied) 3	23.833
	CNS0095601	Golden flower (diploid) 1	15.262
	CNS0095602	Golden flower (diploid) 2	21.839
	CNS0095603	Golden flower (diploid) 3	21.719
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.547
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.259
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.220
	CNS0095610	Silvery flower (tetraploid) 1	24.170
	CNS0095611	Silvery flower (tetraploid) 2	26.169
	CNS0095612	Silvery flower (tetraploid) 3	26.773
	CNS0095613	Golden flower (tetraploid) 1	9.066
	CNS0095614	Golden flower (tetraploid) 2	19.392
	CNS0095615	Golden flower (tetraploid) 3	11.061
CRA001975	CRR073297	Stem 1	19.816
	CRR073298	Stem 2	18.305
	CRR073299	Stem 3	18.928
	CRR073300	Leaf 1	16.359
	CRR073301	Leaf 2	13.579
	CRR073302	Leaf 3	14.143
	CRR073303	Juvenile bud 1	10.465
	CRR073304	Juvenile bud 2	10.872
	CRR073305	Juvenile bud 3	13.999
	CRR073306	Third green 1	3.508
	CRR073307	Third green 2	3.729
	CRR073308	Third green 3	3.112
	CRR073309	Second white 1	8.155
	CRR073310	Second white 2	9.640
	CRR073311	Second white 3	10.138
	CRR073312	Silver flowering 1	9.308
	CRR073313	Silver flowering 2	5.524
	CRR073314	Silver flowering 3	5.953
	CRR073315	Gold flowering 1	5.131
	CRR073316	Gold flowering 2	8.988
	CRR073317	Gold flowering 3	7.510
	CRR073318	Tawny withering 1	12.806
	CRR073319	Tawny withering 2	11.147
	CRR073320	Tawny withering 3	10.680