Detail information of GWHGAAZE028903


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010250288.10PREDICTED: protein TOPLESS-like isoform X2 [Nelumbo nucifera]
COGYP_003885555.15E-21sigma 54 interacting domain-containing protein
Swissprottr|Q0WV90|TPR1_ARATH0Topless-related protein 1
trEMBLtr|I1M5W3|I1M5W3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44420.1}
TAIR10AT1G80490.10TOPLESS-related 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene7265556072667155+
GWHAAZE00000008mRNA7265556072667155+
GWHAAZE00000008exon7265556072655636+
GWHAAZE00000008exon7265571572655894+
GWHAAZE00000008exon7265599272656105+
GWHAAZE00000008exon7265643872656596+
GWHAAZE00000008exon7265708572657211+
GWHAAZE00000008exon7265733972657465+
GWHAAZE00000008exon7265772672657796+
GWHAAZE00000008exon7265794572658095+
GWHAAZE00000008exon7265821172658320+
GWHAAZE00000008exon7265842872658497+
GWHAAZE00000008exon7265859772658670+
GWHAAZE00000008exon7265954572659640+
GWHAAZE00000008exon7265983072659925+
GWHAAZE00000008exon7266016972660296+
GWHAAZE00000008exon7266037472660608+
GWHAAZE00000008exon7266152772661691+
GWHAAZE00000008exon7266177872661858+
GWHAAZE00000008exon7266227072662416+
GWHAAZE00000008exon7266302472663062+
GWHAAZE00000008exon7266317672663289+
GWHAAZE00000008exon7266364972663828+
GWHAAZE00000008exon7266476472664892+
GWHAAZE00000008exon7266497872665073+
GWHAAZE00000008exon7266587872666060+
GWHAAZE00000008exon7266617672666300+
GWHAAZE00000008exon7266699072667155+
GWHAAZE00000008CDS7265556072655636+
GWHAAZE00000008CDS7265571572655894+
GWHAAZE00000008CDS7265599272656105+
GWHAAZE00000008CDS7265643872656596+
GWHAAZE00000008CDS7265708572657211+
GWHAAZE00000008CDS7265733972657465+
GWHAAZE00000008CDS7265772672657796+
GWHAAZE00000008CDS7265794572658095+
GWHAAZE00000008CDS7265821172658320+
GWHAAZE00000008CDS7265842872658497+
GWHAAZE00000008CDS7265859772658670+
GWHAAZE00000008CDS7265954572659640+
GWHAAZE00000008CDS7265983072659925+
GWHAAZE00000008CDS7266016972660296+
GWHAAZE00000008CDS7266037472660608+
GWHAAZE00000008CDS7266152772661691+
GWHAAZE00000008CDS7266177872661858+
GWHAAZE00000008CDS7266227072662416+
GWHAAZE00000008CDS7266302472663062+
GWHAAZE00000008CDS7266317672663289+
GWHAAZE00000008CDS7266364972663828+
GWHAAZE00000008CDS7266476472664892+
GWHAAZE00000008CDS7266497872665073+
GWHAAZE00000008CDS7266587872666060+
GWHAAZE00000008CDS7266617672666300+
GWHAAZE00000008CDS7266699072667155+
Transcript Sequence

Network for GWHGAAZE028903

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17814.2LisH_TPL4323.00E-05
PF00400.33WD404174550.00082
PF00400.33WD408929270.00034
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.253
SRR3591706second leaf6.120
SRR3591707mature leaf5.493
SRR3591708Shoot apex12.295
SRR3591709Stem34.938
SRR3591710White floral bud9.341
SRR3591711White flower8.236
SRR3591712Green floral bud12.140
SRR3591713Yellow flower2.656
SRP173429 SRR8316895Juvenile bud stage 4.778
SRR8316896Juvenile bud stage 4.810
SRR8316897Juvenile bud stage 1.757
SRR8316894Third green stage 2.438
SRR8316900Third green stage 4.601
SRR8316901Third green stage 4.581
SRR8316898Complete white stage 1.307
SRR8316899Complete white stage 13.651
SRR8316903Complete white stage 3.206
SRR8316902Silver flowering stage0.440
SRR8316904Silver flowering stage0.821
SRR8316905Silver flowering stage0.265
SRR8316906Gold flowering stage 0.378
SRR8316907Gold flowering stage 0.865
SRR8316908Gold flowering stage 0.632
SRP132670SRR6706286Control5.745
SRR6706287Light intensity 50%5.637
SRR6706288Light intensity 20%6.013
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.521
CNS0095593Slightly white alabastrum(diploid) 27.604
CNS0095594Slightly white alabastrum(diploid) 35.603
CNS0095595Whole white alabastrum(diploid) 25.230
CNS0095596Whole white alabastrum(diploid) 33.699
CNS0095597Whole white alabastrum(diploid) 44.905
CNS0095598Silvery flower (diploied) 17.538
CNS0095599Silvery flower (diploied) 26.994
CNS0095600Silvery flower (diploied) 34.373
CNS0095601Golden flower (diploid) 15.683
CNS0095602Golden flower (diploid) 24.651
CNS0095603Golden flower (diploid) 34.410
CNS0095604Slightly white alabastrum(tetraploid) 17.681
CNS0095605Slightly white alabastrum(tetraploid) 25.448
CNS0095606Slightly white alabastrum(tetraploid) 316.280
CNS0095607Whole white alabastrum(tetraploid) 16.588
CNS0095608Whole white alabastrum(tetraploid) 24.843
CNS0095609Whole white alabastrum(tetraploid) 35.944
CNS0095610Silvery flower (tetraploid) 14.327
CNS0095611Silvery flower (tetraploid) 25.808
CNS0095612Silvery flower (tetraploid) 33.116
CNS0095613Golden flower (tetraploid) 11.152
CNS0095614Golden flower (tetraploid) 22.714
CNS0095615Golden flower (tetraploid) 30.967
CRA001975CRR073297Stem 15.371
CRR073298Stem 24.969
CRR073299Stem 36.018
CRR073300Leaf 17.425
CRR073301Leaf 27.351
CRR073302Leaf 34.890
CRR073303Juvenile bud 18.175
CRR073304Juvenile bud 24.058
CRR073305Juvenile bud 311.576
CRR073306Third green 10.420
CRR073307Third green 20.530
CRR073308Third green 30.674
CRR073309Second white 10.402
CRR073310Second white 20.398
CRR073311Second white 30.271
CRR073312Silver flowering 10.163
CRR073313Silver flowering 20.098
CRR073314Silver flowering 30.045
CRR073315Gold flowering 11.550
CRR073316Gold flowering 23.054
CRR073317Gold flowering 32.985
CRR073318Tawny withering 115.760
CRR073319Tawny withering 216.917
CRR073320Tawny withering 314.837