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Detail information of GWHGAAZE028903
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010250288.1
0
PREDICTED: protein TOPLESS-like isoform X2 [Nelumbo nucifera]
COG
YP_003885555.1
5E-21
sigma 54 interacting domain-containing protein
Swissprot
tr|Q0WV90|TPR1_ARATH
0
Topless-related protein 1
trEMBL
tr|I1M5W3|I1M5W3_SOYBN
0
Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44420.1}
TAIR10
AT1G80490.1
0
TOPLESS-related 1
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
72655560
72667155
+
GWHAAZE00000008
mRNA
72655560
72667155
+
GWHAAZE00000008
exon
72655560
72655636
+
GWHAAZE00000008
exon
72655715
72655894
+
GWHAAZE00000008
exon
72655992
72656105
+
GWHAAZE00000008
exon
72656438
72656596
+
GWHAAZE00000008
exon
72657085
72657211
+
GWHAAZE00000008
exon
72657339
72657465
+
GWHAAZE00000008
exon
72657726
72657796
+
GWHAAZE00000008
exon
72657945
72658095
+
GWHAAZE00000008
exon
72658211
72658320
+
GWHAAZE00000008
exon
72658428
72658497
+
GWHAAZE00000008
exon
72658597
72658670
+
GWHAAZE00000008
exon
72659545
72659640
+
GWHAAZE00000008
exon
72659830
72659925
+
GWHAAZE00000008
exon
72660169
72660296
+
GWHAAZE00000008
exon
72660374
72660608
+
GWHAAZE00000008
exon
72661527
72661691
+
GWHAAZE00000008
exon
72661778
72661858
+
GWHAAZE00000008
exon
72662270
72662416
+
GWHAAZE00000008
exon
72663024
72663062
+
GWHAAZE00000008
exon
72663176
72663289
+
GWHAAZE00000008
exon
72663649
72663828
+
GWHAAZE00000008
exon
72664764
72664892
+
GWHAAZE00000008
exon
72664978
72665073
+
GWHAAZE00000008
exon
72665878
72666060
+
GWHAAZE00000008
exon
72666176
72666300
+
GWHAAZE00000008
exon
72666990
72667155
+
GWHAAZE00000008
CDS
72655560
72655636
+
GWHAAZE00000008
CDS
72655715
72655894
+
GWHAAZE00000008
CDS
72655992
72656105
+
GWHAAZE00000008
CDS
72656438
72656596
+
GWHAAZE00000008
CDS
72657085
72657211
+
GWHAAZE00000008
CDS
72657339
72657465
+
GWHAAZE00000008
CDS
72657726
72657796
+
GWHAAZE00000008
CDS
72657945
72658095
+
GWHAAZE00000008
CDS
72658211
72658320
+
GWHAAZE00000008
CDS
72658428
72658497
+
GWHAAZE00000008
CDS
72658597
72658670
+
GWHAAZE00000008
CDS
72659545
72659640
+
GWHAAZE00000008
CDS
72659830
72659925
+
GWHAAZE00000008
CDS
72660169
72660296
+
GWHAAZE00000008
CDS
72660374
72660608
+
GWHAAZE00000008
CDS
72661527
72661691
+
GWHAAZE00000008
CDS
72661778
72661858
+
GWHAAZE00000008
CDS
72662270
72662416
+
GWHAAZE00000008
CDS
72663024
72663062
+
GWHAAZE00000008
CDS
72663176
72663289
+
GWHAAZE00000008
CDS
72663649
72663828
+
GWHAAZE00000008
CDS
72664764
72664892
+
GWHAAZE00000008
CDS
72664978
72665073
+
GWHAAZE00000008
CDS
72665878
72666060
+
GWHAAZE00000008
CDS
72666176
72666300
+
GWHAAZE00000008
CDS
72666990
72667155
+
Transcript Sequence
>GWHTAAZE028937 ATGTCTCTTAGTAAAGAGCTTATATTCTTGATCTTACAGTTCTGTAATGAGGAAGACCTCAAAAAAACTGCACACATGCTTGAGGAGGAAACGGGTATTTTCTTCGACATGATGCATTTTGAGAACTTGGTGCTTTGTGGTAATTGGGATGAGGCTGAAAGATATCTTTTGGGTTTCATCGGAATCCATGACGATAAATTTTCGATCAAGATTTATTTTGAAATTAGGAAGCAGAAGTTTCTCGAGGCACTGGATCATGACGATCGTGTAAAGGCTTTAGATATTCTTCTGAAAGATCTAAAAGTTTTCGCCTCATCAAATGAGGAGCTGTACGAGGAGATGACTCGGCTTCTTACATTAGACAATTTTAGAACCCATAACTCACTCACCTTGTATGGAGATACACTGTCTGCTAGAAAACTCATGATGGAAGAGCTCAGGAGTATCATTGAGGCATACCCCCCTTTTCAGCAAAAACTAAAATTTCCTGAAATCAATAAGTCAAGGTTACGGCGTCTCATTAACCAGAGCTTAAATTGGCAGCATATTAATTGCACTTATCCTCAGCCAGATCCTGAGATGAAAACCCTTTTTATTGATCATCAATGCCAATTACCTGATCTTTCACATGGACAATCCATTGAGAAAAATCCTCTGCCTTCCAAAGACACATCAACATTAGTATCACCTTTCTCTGGAACGTCAACTTCTAATCCATCATGTACTGAAGCTCTATCCACAATTTCTGACAGAGCACTCAATCCCGGACTTCTAACCAACCCAGATGTGACTTCTGATAGTATCAAGGAAACTGACAGCGTAGCTGAAACTAGGTCCGTTGGGATGTTGAATGAGGTGGCATCGGCTAGCACTTTCCCCAATCAAAATCATAATTCTGAATTAACCATCACTGACGACTTTCCCAAGACTGTTGGATGGAACTTGGAATCGGGATCTTCTCCGACAACAATGGATTTCCACCCTATTCAACAGAGCCTTCTACTAGTTGGAACCGATATTGGTGACGTGGAGTTGTGGGAAGTTATCTCTGGTCAGAAATTACTTTCAAGAAAATTTAGGGTTTGGAAGATAAAAGCTATTTCAATGAAATTTTTGGAGGATTTGGTCAAAGATCAATGTGTCGCAGTTAATCGTATATTGTGGAGCCCAGATGGTTCACTCTTTGGGGTTGCGTATTCAAAACACATTGTGCAGTTATATTCCTACCATAGTGGCAATAACATTCAGAAACAATTGGAGATTGATGCTCATGTTGGTGGTGTTAATGATCTTGCATTCTCTAAACCAAATGAGCAACTTTGTGTCATAACTTGTGGAGATGACAAGCTTATCAAGGTGTGGGATGTCGCTACCGGTATCAGGCAATTTGTTTTCGAAGGTCACGAGGCCCCAGTTTATTCTATACATTCTCATGTGAAGAGCAGCATTCATTTTCTATTTTCAACGTCAACAAATGGAGAGATAAAAGGATGGTTATATGACAATTTGGGACATAGGATTTCATATGATGCCCCGGGACTCGCTTGCACAAGAATGGCTTATTCTGCTGATGGTAAAAGGCTTTTTTCATGTGGGACCAATAAAGAAGGAGTAACGAGCATTGTCGAATGGAACGAGAGTGAAGGTTATGTGTTGAGGACCTATCTAGGTCTTTCCAAATGTTCTTCAGGTGTTGTGCAGTTTGGCACTAGCAAAAACAGGTTTTTGGCTGCTGGTGATGAACATTTAATCAAAGTTTGGGATTTCGATAGTGTTGAACTTCTTGCAACTATTGATGCAGATGGAGAATTGGTTGAAAGTCCTCACATTTGCTTCAACAACAATGGCACATTCTTGGCTGTATTTGCAAATCATAATATAATCAAAATCTTGGCAAACAGTGATGGTCTTCAGTTGCTGCAGAATGCTGATAATCATTTTGTTGATTACCTTAGAACTCTCTCAGAAAATTTAACCGAGCTTACAGTCAATCCAACTGCAACTGCTGGGGGTGCTGGAGCGACAGATGGAGGCACCCCACTGGAGGATAGCCTCGAAAAGAACGAGGATACCGGTATTCAAGAGGATGAGGAACCAGAATCACCTGCAGAACCTTATGACGTATTAGAGGTTCGGAATTTCAATGTAATTGATGAACCTTCACAACTCCAGTCATTAAGGCTCCCTTCTGAAATGAAAATGAACAAGGTTAAGAAAAGGGCAGTCAAGTCAATCAACATGCTCCATAAGATATCGAGGCTGATGTACAGTAATGCAGGTAACGCCATTTTGGCCCTAGCTGCAAATGGCGTTCATTTACTCTGGAAATGGCCAAAAAGTGAAACGAATTCGAGTGCTGAGCCGGCCGTAAAGGTTGCCCCTCAACTATGTCGACCAAAGGGTGGATTACCAATGACCAACGATCTTAATGGTGTCGATTTCAAAAAGGGTGTGGCCTGTTTCGCTTTCTCGAAGAATGATTGTTATGTAGCGTCAGCATCTGGGGGAGCAGTTTCTTTGTTCAACATGATGACGTTTAAGAAAATGAGGACTTTTGCGCAGCCAAAAGCTGCAGCAACATGCATTGCTTTCTACCCTCAAGATAATAATATAATTGCTATTGGAATGGAGGATTCAGCAATTATTCTTTATAAATTCCCCGGGAATGAGATCATAAATGAGCTTAAGGCTCATTCTAATGGGATAACAAGCCTTGCCTTCTCTAGGGGATTGAATGTGCTTGTCTCATCGGGCTCGGATGCTCAGGTTGTTGTGTGGGATAGCATTCTATGGGAGAAGAAGAAAAACAGAATGCTTCAGAAGTCTGTTGGGCGGTTGCCACCATCAGAGACCTATCTCCAATTCCACAAGGATGAGACGCACTTCCTTGCTGTACATGATACTCATCTTGCAATATATGAAACAACGGAACTAAAACATGTCAACCAGTGGGATGTTGGAGGCTTTTGTGCACGAATATCCCATGCAGCATTCTCATGTGATGGCCACTTGGTGTATGCCGGCTTTCGTGACGGAACAGTGTTGATATTCAATACTTCAAACTTGCACGTGAATTCGAACATGTACCCATTCGCAGTTGCCACTCATCCTCGAGATCCGAACCAATTTGCCTTGGGTCTAACAGACGGTGGAGTTGTCATCATTGAGCCTCCGGAATCCGAAGGCCGATGGGATTTCCACCCACCAGTTGACAATGAAACAATGATTAGCACGCTTTAG
Network for GWHGAAZE028903
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF17814.2
LisH_TPL
4
32
3.00E-05
PF00400.33
WD40
417
455
0.00082
PF00400.33
WD40
892
927
0.00034
Protein Sequence
>GWHPAAZE028921 MSLSKELIFLILQFCNEEDLKKTAHMLEEETGIFFDMMHFENLVLCGNWDEAERYLLGFIGIHDDKFSIKIYFEIRKQKFLEALDHDDRVKALDILLKDLKVFASSNEELYEEMTRLLTLDNFRTHNSLTLYGDTLSARKLMMEELRSIIEAYPPFQQKLKFPEINKSRLRRLINQSLNWQHINCTYPQPDPEMKTLFIDHQCQLPDLSHGQSIEKNPLPSKDTSTLVSPFSGTSTSNPSCTEALSTISDRALNPGLLTNPDVTSDSIKETDSVAETRSVGMLNEVASASTFPNQNHNSELTITDDFPKTVGWNLESGSSPTTMDFHPIQQSLLLVGTDIGDVELWEVISGQKLLSRKFRVWKIKAISMKFLEDLVKDQCVAVNRILWSPDGSLFGVAYSKHIVQLYSYHSGNNIQKQLEIDAHVGGVNDLAFSKPNEQLCVITCGDDKLIKVWDVATGIRQFVFEGHEAPVYSIHSHVKSSIHFLFSTSTNGEIKGWLYDNLGHRISYDAPGLACTRMAYSADGKRLFSCGTNKEGVTSIVEWNESEGYVLRTYLGLSKCSSGVVQFGTSKNRFLAAGDEHLIKVWDFDSVELLATIDADGELVESPHICFNNNGTFLAVFANHNIIKILANSDGLQLLQNADNHFVDYLRTLSENLTELTVNPTATAGGAGATDGGTPLEDSLEKNEDTGIQEDEEPESPAEPYDVLEVRNFNVIDEPSQLQSLRLPSEMKMNKVKKRAVKSINMLHKISRLMYSNAGNAILALAANGVHLLWKWPKSETNSSAEPAVKVAPQLCRPKGGLPMTNDLNGVDFKKGVACFAFSKNDCYVASASGGAVSLFNMMTFKKMRTFAQPKAAATCIAFYPQDNNIIAIGMEDSAIILYKFPGNEIINELKAHSNGITSLAFSRGLNVLVSSGSDAQVVVWDSILWEKKKNRMLQKSVGRLPPSETYLQFHKDETHFLAVHDTHLAIYETTELKHVNQWDVGGFCARISHAAFSCDGHLVYAGFRDGTVLIFNTSNLHVNSNMYPFAVATHPRDPNQFALGLTDGGVVIIEPPESEGRWDFHPPVDNETMISTL
Gene family
Gene family
subfamily
Ubiquitin Family
DWD
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
23.253
SRR3591706
second leaf
6.120
SRR3591707
mature leaf
5.493
SRR3591708
Shoot apex
12.295
SRR3591709
Stem
34.938
SRR3591710
White floral bud
9.341
SRR3591711
White flower
8.236
SRR3591712
Green floral bud
12.140
SRR3591713
Yellow flower
2.656
SRP173429
SRR8316895
Juvenile bud stage
4.778
SRR8316896
Juvenile bud stage
4.810
SRR8316897
Juvenile bud stage
1.757
SRR8316894
Third green stage
2.438
SRR8316900
Third green stage
4.601
SRR8316901
Third green stage
4.581
SRR8316898
Complete white stage
1.307
SRR8316899
Complete white stage
13.651
SRR8316903
Complete white stage
3.206
SRR8316902
Silver flowering stage
0.440
SRR8316904
Silver flowering stage
0.821
SRR8316905
Silver flowering stage
0.265
SRR8316906
Gold flowering stage
0.378
SRR8316907
Gold flowering stage
0.865
SRR8316908
Gold flowering stage
0.632
SRP132670
SRR6706286
Control
5.745
SRR6706287
Light intensity 50%
5.637
SRR6706288
Light intensity 20%
6.013
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
5.521
CNS0095593
Slightly white alabastrum(diploid) 2
7.604
CNS0095594
Slightly white alabastrum(diploid) 3
5.603
CNS0095595
Whole white alabastrum(diploid) 2
5.230
CNS0095596
Whole white alabastrum(diploid) 3
3.699
CNS0095597
Whole white alabastrum(diploid) 4
4.905
CNS0095598
Silvery flower (diploied) 1
7.538
CNS0095599
Silvery flower (diploied) 2
6.994
CNS0095600
Silvery flower (diploied) 3
4.373
CNS0095601
Golden flower (diploid) 1
5.683
CNS0095602
Golden flower (diploid) 2
4.651
CNS0095603
Golden flower (diploid) 3
4.410
CNS0095604
Slightly white alabastrum(tetraploid) 1
7.681
CNS0095605
Slightly white alabastrum(tetraploid) 2
5.448
CNS0095606
Slightly white alabastrum(tetraploid) 3
16.280
CNS0095607
Whole white alabastrum(tetraploid) 1
6.588
CNS0095608
Whole white alabastrum(tetraploid) 2
4.843
CNS0095609
Whole white alabastrum(tetraploid) 3
5.944
CNS0095610
Silvery flower (tetraploid) 1
4.327
CNS0095611
Silvery flower (tetraploid) 2
5.808
CNS0095612
Silvery flower (tetraploid) 3
3.116
CNS0095613
Golden flower (tetraploid) 1
1.152
CNS0095614
Golden flower (tetraploid) 2
2.714
CNS0095615
Golden flower (tetraploid) 3
0.967
CRA001975
CRR073297
Stem 1
5.371
CRR073298
Stem 2
4.969
CRR073299
Stem 3
6.018
CRR073300
Leaf 1
7.425
CRR073301
Leaf 2
7.351
CRR073302
Leaf 3
4.890
CRR073303
Juvenile bud 1
8.175
CRR073304
Juvenile bud 2
4.058
CRR073305
Juvenile bud 3
11.576
CRR073306
Third green 1
0.420
CRR073307
Third green 2
0.530
CRR073308
Third green 3
0.674
CRR073309
Second white 1
0.402
CRR073310
Second white 2
0.398
CRR073311
Second white 3
0.271
CRR073312
Silver flowering 1
0.163
CRR073313
Silver flowering 2
0.098
CRR073314
Silver flowering 3
0.045
CRR073315
Gold flowering 1
1.550
CRR073316
Gold flowering 2
3.054
CRR073317
Gold flowering 3
2.985
CRR073318
Tawny withering 1
15.760
CRR073319
Tawny withering 2
16.917
CRR073320
Tawny withering 3
14.837