Gene detail

Detail information of GWHGAAZE028902

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007052468.1	0	Glutamine-fructose-6-phosphate transaminase (isomerizing)s,sugar binding,transaminases isoform 1 [Theobroma cacao]
COG	YP_004054146.1	8E-145	glutamine--fructose-6-phosphate transaminase
Swissprot	tr\|O19908\|GLMS_CYACA	2E-64	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000255\|HAMAP-Rule:MF_00164}
trEMBL	tr\|A0A061DX41\|A0A061DX41_THECC	0	Glutamine-fructose-6-phosphate transaminase (Isomerizing)s,sugar binding,transaminases isoform 1 {ECO:0000313\|EMBL:EOX96626.1}
TAIR10	AT3G24090.1	0	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	72577879	72594292	-
GWHAAZE00000008	mRNA	72577879	72594292	-
GWHAAZE00000008	exon	72594055	72594292	-
GWHAAZE00000008	exon	72593180	72593352	-
GWHAAZE00000008	exon	72592085	72592167	-
GWHAAZE00000008	exon	72591926	72591989	-
GWHAAZE00000008	exon	72591495	72591603	-
GWHAAZE00000008	exon	72588522	72588667	-
GWHAAZE00000008	exon	72587897	72588061	-
GWHAAZE00000008	exon	72585217	72585577	-
GWHAAZE00000008	exon	72584508	72584758	-
GWHAAZE00000008	exon	72584151	72584265	-
GWHAAZE00000008	exon	72583769	72584024	-
GWHAAZE00000008	exon	72582927	72583095	-
GWHAAZE00000008	exon	72578453	72578491	-
GWHAAZE00000008	exon	72577879	72578001	-
GWHAAZE00000008	CDS	72594055	72594292	-
GWHAAZE00000008	CDS	72593180	72593352	-
GWHAAZE00000008	CDS	72592085	72592167	-
GWHAAZE00000008	CDS	72591926	72591989	-
GWHAAZE00000008	CDS	72591495	72591603	-
GWHAAZE00000008	CDS	72588522	72588667	-
GWHAAZE00000008	CDS	72587897	72588061	-
GWHAAZE00000008	CDS	72585217	72585577	-
GWHAAZE00000008	CDS	72584508	72584758	-
GWHAAZE00000008	CDS	72584151	72584265	-
GWHAAZE00000008	CDS	72583769	72584024	-
GWHAAZE00000008	CDS	72582927	72583095	-
GWHAAZE00000008	CDS	72578453	72578491	-
GWHAAZE00000008	CDS	72577879	72578001	-

Transcript Sequence
>GWHTAAZE028936 ATGTGTGGAATATTTGCGTATTTGAATTACAATGTAAACAGAGAGAGGAGATACATTCTCGAAGTACTTTTCAATGGATTGAGGCGTTTAGAGTACAGAGGATACGATTCTGCTGGAATTTCCATCGATTCTCCTTCACTTTTCGGCCATCCAAATGGCTCTTTACCTGATTCTCTACCTCCTCTTGTCTTTCGTAAAGAAGGAAACATTGAATCGCTTGTCAAATCGGTTTACGAAGAGGTTGCAACTACAGATTTAAATTTGGAGGAACCATTTTCTGTTCATGCTGGAATAGCACACACTCGGTGGGCTACACATGGGGAACCAGCTCCAAGGAATAGTCATCCTCAGTCCTCTGGCTCTGGAAACGACTTCTTGGTTGTTCATAATGGAGTTGTCACTAATTATCAGGAGTTTGATGACAAACAGAGGGAACAAAGTAGTCATTGGAGAACAGCAAAGCTGGAAATTGACATCCTAATTGGATTATTAAGACTAGGCCATCTATTGTTTTTGCAGAAATTCGATGGAAGCAGAGGAATTAGGTGTTGTAGTGTGGTGTTAAAGGAAACATTAGTCCGACATGGGTTCACATTTGAATCTGAAACAGATACGGAAGTGATTCCGAAGCTTGCGAAGTTTGTTTTTGACAAAGCAAATGAAGAAGGTGATCAGACTGTCACATTTAGTCAAGTTGTGCTTGAAGTTATGAGGCATCTTGAAGGTGCCTATGCTCTCATTTTCAAAAGCCGACATTATCCAAATGAATTGATTGCGTGCAAACGTGGTAGTCCATTGCTTCTTGGAGTGAAAGAGTTTACAGAAGATGCAAGCAGTGGAGCATCATTTAATGATGTTAAATTCCTTTCAAAAAGTGGGCAACCCAAAGAACTCTTTCTATCTAGTGATGCTCATGCTCTAGTCGAGCACACAAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTTGTTCATCTTAAGGACGGATGTGTGTCCATCCTCAAGTTTGATCAGGGCAAAGGAAAAGACAGTTCTGCCCTTGCTAGGCCTGCTTCAGTGCAGCGCGCATTGTCCATTCTGGAGATGGAAGTTGAGCAGATAAACAAAGGAAAATATGAGCATTATATGCAGAAAGAAATTCATGAGCAACCAGAATCTCTAACAACAACAATGCGGGGGAGGCTTATACGTGGAGGTTCGTGCAAGGCTGAGACTGTTCTTTTGGGTGGACTGAAGGATCACCTAAAAACTATCCGCAGAAGCAGAAGAGTTGTTTTTATTGGTTGCGGCACTAGCTATAATGCTGCTTTAGCTTCAAGACCTATTTTGGAAGAACTTTCTGGTATTCCGGTTACGATGGAGATTGCTAGTGATCTTTTGGATAGACGTGGACTGATATACAGAGAAGACACAGTTGTTTTTGTTAGTCAGTCTGGTGAAACTGCGGATACTTTAAATGCATTGGAATATGCATTAGAAAATGGTGCATTGTGTGTTGGCATCACAAACACTGTTGGTAGTGCAATTGCCAGGAATACACATTGCGGTGTTCATATAAATGCTGGCTCTGAGATAGGCGTGGCTAGTACCAAGGCATATACAAGTCAAATAGTAGTGATGACCATGTTGGCCCTTGCAATTGGCAGTGACACAATCTCTACTCAAGCAAGAAGAGAGGCTATAACAGCTGGTCTATTTGACTTGCCAAGAAAAGTCAGAGAGGTTTTGGAGCTTGATCAGGAAATGAAAGATATTGCTAAATTATTAATTGCTGAGCAATCACTTCTCGTGTTTGGAAGAGGATACAACTACGCAACAGCTCTAGAGGGTGCCTTGAAGGTAAAAGAGGTGTCGCTTATGCACAGTGAAGGAATATTAGCTGGTGAAATGAAACATGGTCCTTTGGCTTTAGTTGACGAAAACCTCCCAATTTTTGTTATTGCCACCCGTGATGCTTGCTTCAGCCAACAAGAGTCTGTTATTCAACAACTTCATGCTCGCAAAGGTCGCCTGATAGTGATGTGTTCAAAAGGAGATGCAGCGTCTGTGAGTGTTGGTGGATCTTGTCGAGTAATTGAAGTTCCTCAGGTTGAGGATTGTCTGCAGCCTGTAGTCAACATAGTTCCATTGCAGAATTATGGTGAAATGGCTTCACCGGAGCGAGAGATTCCACCGAGGGCGATTACTTCCGGCCGCGTCCGAGAAATGTGTAGCCGTTGTCGGCCGCCGTGTGGAGGTGGTGTGGCGGCCGCCGCTACACTGAGGCCGCAGATTTTTTGCGCTGCAATCAGCTAG

Network for GWHGAAZE028902

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13522.7	GATase_6	95	152	5.00E-07
PF01380.23	SIS	417	544	2.10E-34
PF01380.23	SIS	588	710	3.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00820	glmS, GFPT	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:1901135	biological_process	carbohydrate derivative metabolic process
GO:0097367	molecular_function	carbohydrate derivative binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.739
	SRR3591706	second leaf	7.180
	SRR3591707	mature leaf	5.058
	SRR3591708	Shoot apex	16.087
	SRR3591709	Stem	11.424
	SRR3591710	White floral bud	18.236
	SRR3591711	White flower	17.716
	SRR3591712	Green floral bud	14.756
	SRR3591713	Yellow flower	17.467
SRP173429	SRR8316895	Juvenile bud stage	9.224
	SRR8316896	Juvenile bud stage	12.700
	SRR8316897	Juvenile bud stage	5.816
	SRR8316894	Third green stage	5.638
	SRR8316900	Third green stage	11.460
	SRR8316901	Third green stage	10.501
	SRR8316898	Complete white stage	6.506
	SRR8316899	Complete white stage	14.381
	SRR8316903	Complete white stage	10.980
	SRR8316902	Silver flowering stage	5.319
	SRR8316904	Silver flowering stage	9.330
	SRR8316905	Silver flowering stage	4.569
	SRR8316906	Gold flowering stage	19.361
	SRR8316907	Gold flowering stage	14.101
	SRR8316908	Gold flowering stage	18.122
SRP132670	SRR6706286	Control	7.494
	SRR6706287	Light intensity 50%	7.214
	SRR6706288	Light intensity 20%	7.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.284
	CNS0095593	Slightly white alabastrum(diploid) 2	8.457
	CNS0095594	Slightly white alabastrum(diploid) 3	8.272
	CNS0095595	Whole white alabastrum(diploid) 2	7.057
	CNS0095596	Whole white alabastrum(diploid) 3	7.010
	CNS0095597	Whole white alabastrum(diploid) 4	7.306
	CNS0095598	Silvery flower (diploied) 1	16.933
	CNS0095599	Silvery flower (diploied) 2	13.270
	CNS0095600	Silvery flower (diploied) 3	14.913
	CNS0095601	Golden flower (diploid) 1	12.590
	CNS0095602	Golden flower (diploid) 2	17.464
	CNS0095603	Golden flower (diploid) 3	17.900
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.463
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.848
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.974
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.214
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.658
	CNS0095610	Silvery flower (tetraploid) 1	14.014
	CNS0095611	Silvery flower (tetraploid) 2	11.767
	CNS0095612	Silvery flower (tetraploid) 3	14.396
	CNS0095613	Golden flower (tetraploid) 1	7.797
	CNS0095614	Golden flower (tetraploid) 2	12.990
	CNS0095615	Golden flower (tetraploid) 3	9.492
CRA001975	CRR073297	Stem 1	15.768
	CRR073298	Stem 2	13.973
	CRR073299	Stem 3	13.352
	CRR073300	Leaf 1	12.695
	CRR073301	Leaf 2	12.017
	CRR073302	Leaf 3	12.954
	CRR073303	Juvenile bud 1	9.655
	CRR073304	Juvenile bud 2	10.654
	CRR073305	Juvenile bud 3	12.428
	CRR073306	Third green 1	5.299
	CRR073307	Third green 2	4.656
	CRR073308	Third green 3	6.377
	CRR073309	Second white 1	6.502
	CRR073310	Second white 2	6.501
	CRR073311	Second white 3	5.015
	CRR073312	Silver flowering 1	8.000
	CRR073313	Silver flowering 2	7.514
	CRR073314	Silver flowering 3	8.151
	CRR073315	Gold flowering 1	3.297
	CRR073316	Gold flowering 2	8.190
	CRR073317	Gold flowering 3	5.945
	CRR073318	Tawny withering 1	18.379
	CRR073319	Tawny withering 2	17.475
	CRR073320	Tawny withering 3	11.088