Detail information of GWHGAAZE028873


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010101269.11.96608E-35DEAD-box ATP-dependent RNA helicase 56 [Morus notabilis]
Swissprottr|Q9LFN6|RH56_ARATH2E-27DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|M0SHW6|M0SHW6_MUSAM3E-38Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P26000_001}
TAIR10AT5G11200.21E-23DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene7159822571600117+
GWHAAZE00000008mRNA7159822571600117+
GWHAAZE00000008exon7159822571598337+
GWHAAZE00000008exon7159998871600117+
GWHAAZE00000008CDS7159822571598337+
GWHAAZE00000008CDS7159998871600117+
Transcript Sequence

Network for GWHGAAZE028873

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12812DDX39B, UAP56, SUB2 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.478
SRR3591706second leaf27.699
SRR3591707mature leaf20.991
SRR3591708Shoot apex49.820
SRR3591709Stem30.526
SRR3591710White floral bud26.957
SRR3591711White flower56.377
SRR3591712Green floral bud35.640
SRR3591713Yellow flower29.298
SRP173429 SRR8316895Juvenile bud stage 26.959
SRR8316896Juvenile bud stage 42.609
SRR8316897Juvenile bud stage 15.004
SRR8316894Third green stage 19.564
SRR8316900Third green stage 39.022
SRR8316901Third green stage 45.279
SRR8316898Complete white stage 15.510
SRR8316899Complete white stage 52.356
SRR8316903Complete white stage 23.253
SRR8316902Silver flowering stage20.942
SRR8316904Silver flowering stage22.377
SRR8316905Silver flowering stage10.161
SRR8316906Gold flowering stage 31.621
SRR8316907Gold flowering stage 33.319
SRR8316908Gold flowering stage 40.219
SRP132670SRR6706286Control27.085
SRR6706287Light intensity 50%28.901
SRR6706288Light intensity 20%32.961
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.658
CNS0095593Slightly white alabastrum(diploid) 28.406
CNS0095594Slightly white alabastrum(diploid) 312.762
CNS0095595Whole white alabastrum(diploid) 29.132
CNS0095596Whole white alabastrum(diploid) 312.300
CNS0095597Whole white alabastrum(diploid) 46.720
CNS0095598Silvery flower (diploied) 120.291
CNS0095599Silvery flower (diploied) 214.526
CNS0095600Silvery flower (diploied) 325.922
CNS0095601Golden flower (diploid) 112.650
CNS0095602Golden flower (diploid) 217.603
CNS0095603Golden flower (diploid) 321.127
CNS0095604Slightly white alabastrum(tetraploid) 112.326
CNS0095605Slightly white alabastrum(tetraploid) 210.681
CNS0095606Slightly white alabastrum(tetraploid) 336.709
CNS0095607Whole white alabastrum(tetraploid) 19.383
CNS0095608Whole white alabastrum(tetraploid) 22.942
CNS0095609Whole white alabastrum(tetraploid) 318.297
CNS0095610Silvery flower (tetraploid) 126.636
CNS0095611Silvery flower (tetraploid) 224.205
CNS0095612Silvery flower (tetraploid) 336.402
CNS0095613Golden flower (tetraploid) 110.583
CNS0095614Golden flower (tetraploid) 214.025
CNS0095615Golden flower (tetraploid) 328.983
CRA001975CRR073297Stem 172.154
CRR073298Stem 269.431
CRR073299Stem 388.757
CRR073300Leaf 164.950
CRR073301Leaf 258.542
CRR073302Leaf 353.454
CRR073303Juvenile bud 149.575
CRR073304Juvenile bud 226.528
CRR073305Juvenile bud 350.643
CRR073306Third green 121.273
CRR073307Third green 216.150
CRR073308Third green 318.828
CRR073309Second white 113.662
CRR073310Second white 216.972
CRR073311Second white 38.523
CRR073312Silver flowering 124.348
CRR073313Silver flowering 220.130
CRR073314Silver flowering 318.442
CRR073315Gold flowering 139.609
CRR073316Gold flowering 261.372
CRR073317Gold flowering 373.345
CRR073318Tawny withering 152.604
CRR073319Tawny withering 235.959
CRR073320Tawny withering 349.924