Gene detail

Detail information of GWHGAAZE028623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249963.1	0	PREDICTED: 3-ketoacyl-CoA synthase 11-like [Nelumbo nucifera]
COG	YP_003716923.1	3E-18	naringenin-chalcone synthase
Swissprot	tr\|O48780\|KCS11_ARATH	0	3-ketoacyl-CoA synthase 11
trEMBL	tr\|V4UMZ1\|V4UMZ1_9ROSI	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26640.1	0	3-ketoacyl-CoA synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	61619370	61620905	-
GWHAAZE00000008	mRNA	61619370	61620905	-
GWHAAZE00000008	exon	61620782	61620905	-
GWHAAZE00000008	exon	61619811	61620739	-
GWHAAZE00000008	exon	61619370	61619717	-
GWHAAZE00000008	CDS	61620782	61620905	-
GWHAAZE00000008	CDS	61619811	61620739	-
GWHAAZE00000008	CDS	61619370	61619717	-

Transcript Sequence
>GWHTAAZE028657 ATGGACGAATCGAAACTTGACAAACCCTTGATTCCACCATCTTATTCTCGAAAACTGCCCGATTTCAAGAAATCAATCAAACTGAAATATGTGAAACTGGGATATCATTACCTAATTACCCATGCTCAAATTTCAACATTCTCGCTCCAAGATATTTATGTTCTTTGGGATCATCTTAGATTCAATCTCATATCAGTCGTTGTATGTTCGACCCTCTTAGTTTTCTTGTCGACCCTTTACTTCCTCACCCGTCCTTGCCCCGTTTACCTTGTGAATTTCTCGTGCTATAAACCCGAAGAGGATCGAAAATGCACAAGGCAGATCTTCATGGAGCGGTCCCGTTTGATAGGTTCATTTACGGAGGAAAATCTTGATTTCCAGAGGAAAATTCTTGAACGGTCCGGTCTTGGTGAATCGACTTACCTACCCGAAGCCGTTCTTAGAGTACCACCAAATCCATGTATGAAAGAAGCAAGAAAGGAAGCCGAACTTGTGATGTTCGGTGCCATTGACGAGTTGTTTGCGAAAACCTCTGTAAAGGCTAAGGATATTGGGATCTTGATCGTGAATTGTAGCTTGTTTAATCCGACCCCGTCTCTTTCGGCTATGATCGTTAACCATTACAAGCTTAGAGGGAATATTGTTAGCTATAATCTTGGTGGAATGGGTTGTAGTGCTGGGTTGATCTCGATTGATCTTGCTAAAGATCTTCTTCAAGTCCATCCCAATTCATATGCGCTTGTGATTAGCATGGAGAACATCACTTTGAATTGGTATTTTGGGAATGAGAGATCTATGCTCGTTTCGAATTGCTTGTTCCGAATGGGGGGAGCCGCTATTTTGCTCTCGAACCGACGGTCCGACCGAAGGCAGTCCAAGTACCAGTTGGTCCACACGGTTCGAACCAACAAAGGTGCTGATGATAAATGCTTCTCCTGTGTTACTCAAATGGAGGATCCGAACGGGAAAGTCGGAGTTGCTTTATCTAAAGATCTAATGGCGGTTGCTGGTGAGGCTCTAAAGACCAATATTACTACTTTAGGCCCCCTTGTTTTGGCTTTTGAGCATTTTTGTATTCATGCTGGTGGAAGAGCCGTATTAGATGAGCTAGAAAAGAACCTGCAACTCTCAGATTGGAATATGGAGCCTTCAAGAATGACACTTTACCGATTTGGCAACACTTCAAGTAGCTCTCTTTGGTATGAATTGGCTTACACGGAAGCCAAGGGGAGGATCAAGAAAGGAGATAGAACTTGGCAAATAGCGTTTGGATCTGGGTTCAAGTGTAACAGCGCTGTTTGGAAGGCTTTGAGGACTATAGATCCGGCAAAGGAGAAGAACCCTTGGATGGACGAGATTCATCAGTTCCCTGTTGATGTTCCAAGGGTATCGGCCCTTTGA

Network for GWHGAAZE028623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	80	354	6.20E-137
PF08541.11	ACP_syn_III_C	355	435	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.019
	SRR3591706	second leaf	21.996
	SRR3591707	mature leaf	26.311
	SRR3591708	Shoot apex	34.433
	SRR3591709	Stem	42.426
	SRR3591710	White floral bud	93.827
	SRR3591711	White flower	86.605
	SRR3591712	Green floral bud	79.513
	SRR3591713	Yellow flower	76.733
SRP173429	SRR8316895	Juvenile bud stage	34.909
	SRR8316896	Juvenile bud stage	40.253
	SRR8316897	Juvenile bud stage	19.265
	SRR8316894	Third green stage	19.029
	SRR8316900	Third green stage	57.128
	SRR8316901	Third green stage	62.922
	SRR8316898	Complete white stage	35.487
	SRR8316899	Complete white stage	80.951
	SRR8316903	Complete white stage	67.214
	SRR8316902	Silver flowering stage	31.891
	SRR8316904	Silver flowering stage	43.997
	SRR8316905	Silver flowering stage	23.883
	SRR8316906	Gold flowering stage	70.874
	SRR8316907	Gold flowering stage	78.057
	SRR8316908	Gold flowering stage	90.604
SRP132670	SRR6706286	Control	41.491
	SRR6706287	Light intensity 50%	41.979
	SRR6706288	Light intensity 20%	44.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.568
	CNS0095593	Slightly white alabastrum(diploid) 2	46.446
	CNS0095594	Slightly white alabastrum(diploid) 3	37.811
	CNS0095595	Whole white alabastrum(diploid) 2	51.702
	CNS0095596	Whole white alabastrum(diploid) 3	53.869
	CNS0095597	Whole white alabastrum(diploid) 4	58.684
	CNS0095598	Silvery flower (diploied) 1	47.957
	CNS0095599	Silvery flower (diploied) 2	49.894
	CNS0095600	Silvery flower (diploied) 3	103.448
	CNS0095601	Golden flower (diploid) 1	45.268
	CNS0095602	Golden flower (diploid) 2	89.800
	CNS0095603	Golden flower (diploid) 3	87.332
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.698
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.780
	CNS0095610	Silvery flower (tetraploid) 1	75.300
	CNS0095611	Silvery flower (tetraploid) 2	66.854
	CNS0095612	Silvery flower (tetraploid) 3	119.067
	CNS0095613	Golden flower (tetraploid) 1	42.682
	CNS0095614	Golden flower (tetraploid) 2	61.565
	CNS0095615	Golden flower (tetraploid) 3	48.768
CRA001975	CRR073297	Stem 1	58.404
	CRR073298	Stem 2	60.895
	CRR073299	Stem 3	60.027
	CRR073300	Leaf 1	86.466
	CRR073301	Leaf 2	69.349
	CRR073302	Leaf 3	65.801
	CRR073303	Juvenile bud 1	80.371
	CRR073304	Juvenile bud 2	90.027
	CRR073305	Juvenile bud 3	91.151
	CRR073306	Third green 1	68.765
	CRR073307	Third green 2	78.511
	CRR073308	Third green 3	72.315
	CRR073309	Second white 1	89.264
	CRR073310	Second white 2	61.886
	CRR073311	Second white 3	66.774
	CRR073312	Silver flowering 1	85.466
	CRR073313	Silver flowering 2	89.343
	CRR073314	Silver flowering 3	77.042
	CRR073315	Gold flowering 1	47.145
	CRR073316	Gold flowering 2	58.407
	CRR073317	Gold flowering 3	50.351
	CRR073318	Tawny withering 1	76.558
	CRR073319	Tawny withering 2	51.393
	CRR073320	Tawny withering 3	73.281