Gene detail

Detail information of GWHGAAZE028588

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002516580.1	0	monooxygenase, putative [Ricinus communis]
COG	NP_108142.1	9E-74	dimethylaniline monooxygenase
Swissprot	tr\|Q9SVQ1\|YUC2_ARATH	0	Indole-3-pyruvate monooxygenase YUCCA2
trEMBL	tr\|B9RS61\|B9RS61_RICCO	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}
TAIR10	AT4G13260.1	1E-152	Flavin-binding monooxygenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	60485305	60487946	-
GWHAAZE00000008	mRNA	60485305	60487946	-
GWHAAZE00000008	exon	60485305	60485523	-
GWHAAZE00000008	exon	60485803	60485925	-
GWHAAZE00000008	exon	60486304	60486552	-
GWHAAZE00000008	exon	60487278	60487946	-
GWHAAZE00000008	CDS	60487278	60487946	-
GWHAAZE00000008	CDS	60486304	60486552	-
GWHAAZE00000008	CDS	60485803	60485925	-
GWHAAZE00000008	CDS	60485305	60485523	-

Transcript Sequence
>GWHTAAZE028622 ATGGAGTACCTAAGGGAAATCGAGTGCAAATCCGTCCACGACAGCCGTTATGGCACCGGAAATATTCATTCCGTTTTTGTTCCCGGCCCCGTCATTGTCGGGGCCGGGCCCTCGGGGCTGGCAACTGCTGCCTGCCTCAAGGAAAAAGGCGTACCGAGTGTGATCCTAGAGAGGTCTAACGACATTGCGTCCCTCTGGAAAACAAAGAGCTACGACAGGCTGAAGCTCCATTTGCCTAAACAATTCTGTGAGCTTCCGCTAAAAGGTTTTCCGGATCACTACCCAACTTATCCTTCCAGGAGCGAATTCGTCGAGTATTTGGAGGATTACGTGAGGGAGTTTGAGTTAAGGCCGGTTTTTAATAGCAGAGTTTTGAGAGCGGAGTACGATGAGAGCGTGGGGTTTTGGAGGGTGAGGAGTGAGGGCGGGGAGGAGTACGTTTGCCGGTGGTTGGTGGTGGCCACGGGGGAGAATGCGGAGGCGGTGGTGCCGGAGATTGAAGGGGTGAAGGAGTTTGGAGGGGAGGTGTTGCATACAAGTGAGTATAGGAGTGGGGAGGGTTATTTTGGGAAGAGAGTGTTGGTTGTTGGGTGTGGGAATTCTGGTATGGAGGTTGTTTTGGATCTTTGTAATCATAATGCTAATGCCTCTGTTGTGATCAGAGATTCATTGCATATCTTACCACAACAAATGTTGGGAATATCAACCTTCGGGTTGTCCATGTCTATGCTCAAGTGGTTCCCAATTCGCATGGTAGATCAAGTTTTGTTGGTTGTATCTTGGCTTCTTTACGGAGACATGTCCAAATTCGGCATTATGCGACCTCAGCTAGGACCATTGGAGCTAAAGCACTTGTGCGGTAAGACGCCCGTACTGGACGTTGGTACCTTTGCCAAAATCAGAAAGGGAGAAATCAAGGTATGTCCAAGCATTAAGTGTGTAAGACATCAAGAAGTGGAGTTTATTGATGGGATGATAGAAAATTTTGATGCAATCATCTTGGCAACTGGCTATAAGAGCAATGTACCCTCTTGGTTAAAGGAGAAAGATATGTTCTCGGAGATAGATGGGTTCCCTCGAAAGCCATTTCCAAATGGGTGGAAAGGCGAGAACGGGCTATACTCGGCAGGGTTCACTAAACGTGGCATTTTTGGTGCATCCTTTGACGCTAGGAGGATCGCTGATGACATCGAACGGTGCTGGAAAGCCGAGGCGAAGCATCTGACGGCTGTTGCTCGTGCGTTTTTGTCCGAGACATAA

Network for GWHGAAZE028588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00743.20	FMO-like	32	343	1.90E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11816	YUCCA	Metabolic pathways	map01100
K11816	YUCCA	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004499	molecular_function	N,N-dimethylaniline monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.227
	SRR3591711	White flower	0.243
	SRR3591712	Green floral bud	7.074
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.178
	SRR8316896	Juvenile bud stage	5.446
	SRR8316897	Juvenile bud stage	3.455
	SRR8316894	Third green stage	2.486
	SRR8316900	Third green stage	10.097
	SRR8316901	Third green stage	5.852
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.036
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.522
	SRR6706287	Light intensity 50%	8.171
	SRR6706288	Light intensity 20%	8.499
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.947
	CNS0095593	Slightly white alabastrum(diploid) 2	2.146
	CNS0095594	Slightly white alabastrum(diploid) 3	1.915
	CNS0095595	Whole white alabastrum(diploid) 2	5.878
	CNS0095596	Whole white alabastrum(diploid) 3	7.266
	CNS0095597	Whole white alabastrum(diploid) 4	5.254
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.059
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.445
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.850
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.678
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.052
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	2.077
	CRR073298	Stem 2	2.887
	CRR073299	Stem 3	4.306
	CRR073300	Leaf 1	1.294
	CRR073301	Leaf 2	1.120
	CRR073302	Leaf 3	0.509
	CRR073303	Juvenile bud 1	2.094
	CRR073304	Juvenile bud 2	0.054
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.070
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.016
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.156