Detail information of GWHGAAZE028564


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010665675.16.88901E-58PREDICTED: protein PEROXIN-4 isoform X2 [Beta vulgaris subsp. vulgaris]
Swissprottr|Q8LGF7|PEX4_ARATH6E-57Protein PEROXIN-4
trEMBLtr|A0A067GJ63|A0A067GJ63_CITSI2E-57Uncharacterized protein {ECO:0000313|EMBL:KDO79748.1}
TAIR10AT5G25760.22E-45peroxin4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5993739859942986+
GWHAAZE00000008mRNA5993739859942986+
GWHAAZE00000008exon5993739859937403+
GWHAAZE00000008exon5993923559939354+
GWHAAZE00000008exon5993943059939556+
GWHAAZE00000008exon5994289859942986+
GWHAAZE00000008CDS5993739859937403+
GWHAAZE00000008CDS5993923559939354+
GWHAAZE00000008CDS5993943059939556+
GWHAAZE00000008CDS5994289859942986+
Transcript Sequence

Network for GWHGAAZE028564

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con7772.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.924
SRR3591706second leaf18.382
SRR3591707mature leaf13.705
SRR3591708Shoot apex22.054
SRR3591709Stem35.933
SRR3591710White floral bud36.640
SRR3591711White flower26.302
SRR3591712Green floral bud18.165
SRR3591713Yellow flower23.649
SRP173429 SRR8316895Juvenile bud stage 11.176
SRR8316896Juvenile bud stage 13.490
SRR8316897Juvenile bud stage 5.372
SRR8316894Third green stage 7.597
SRR8316900Third green stage 6.520
SRR8316901Third green stage 22.104
SRR8316898Complete white stage 10.218
SRR8316899Complete white stage 14.720
SRR8316903Complete white stage 16.429
SRR8316902Silver flowering stage4.914
SRR8316904Silver flowering stage15.349
SRR8316905Silver flowering stage5.693
SRR8316906Gold flowering stage 27.998
SRR8316907Gold flowering stage 16.193
SRR8316908Gold flowering stage 22.940
SRP132670SRR6706286Control4.732
SRR6706287Light intensity 50%6.676
SRR6706288Light intensity 20%10.410
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.095
CNS0095593Slightly white alabastrum(diploid) 220.802
CNS0095594Slightly white alabastrum(diploid) 318.727
CNS0095595Whole white alabastrum(diploid) 224.669
CNS0095596Whole white alabastrum(diploid) 320.398
CNS0095597Whole white alabastrum(diploid) 419.894
CNS0095598Silvery flower (diploied) 125.803
CNS0095599Silvery flower (diploied) 227.078
CNS0095600Silvery flower (diploied) 314.458
CNS0095601Golden flower (diploid) 116.573
CNS0095602Golden flower (diploid) 211.922
CNS0095603Golden flower (diploid) 318.968
CNS0095604Slightly white alabastrum(tetraploid) 121.151
CNS0095605Slightly white alabastrum(tetraploid) 220.378
CNS0095606Slightly white alabastrum(tetraploid) 331.773
CNS0095607Whole white alabastrum(tetraploid) 114.991
CNS0095608Whole white alabastrum(tetraploid) 212.728
CNS0095609Whole white alabastrum(tetraploid) 320.630
CNS0095610Silvery flower (tetraploid) 132.033
CNS0095611Silvery flower (tetraploid) 222.036
CNS0095612Silvery flower (tetraploid) 319.760
CNS0095613Golden flower (tetraploid) 133.788
CNS0095614Golden flower (tetraploid) 231.590
CNS0095615Golden flower (tetraploid) 322.122
CRA001975CRR073297Stem 18.052
CRR073298Stem 28.029
CRR073299Stem 37.910
CRR073300Leaf 111.388
CRR073301Leaf 211.891
CRR073302Leaf 38.889
CRR073303Juvenile bud 111.927
CRR073304Juvenile bud 25.733
CRR073305Juvenile bud 36.742
CRR073306Third green 16.243
CRR073307Third green 25.410
CRR073308Third green 38.319
CRR073309Second white 19.990
CRR073310Second white 210.840
CRR073311Second white 39.458
CRR073312Silver flowering 16.800
CRR073313Silver flowering 24.754
CRR073314Silver flowering 36.778
CRR073315Gold flowering 14.314
CRR073316Gold flowering 25.294
CRR073317Gold flowering 32.618
CRR073318Tawny withering 18.874
CRR073319Tawny withering 212.101
CRR073320Tawny withering 310.430