Detail information of GWHGAAZE028514


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008393882.10PREDICTED: tocopherol cyclase, chloroplastic [Malus domestica]
Swissprottr|Q94FY7|TOCC_ARATH0Tocopherol cyclase, chloroplastic (Precursor)
trEMBLtr|A0A067KD96|A0A067KD96_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP34191.1}
TAIR10AT4G32770.10tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5879382458806326-
GWHAAZE00000008mRNA5879382458806326-
GWHAAZE00000008exon5879382458794000-
GWHAAZE00000008exon5879570158795850-
GWHAAZE00000008exon5879673658796833-
GWHAAZE00000008exon5879758858797699-
GWHAAZE00000008exon5879855858798655-
GWHAAZE00000008exon5880034858800574-
GWHAAZE00000008exon5880267558802751-
GWHAAZE00000008exon5880382058803899-
GWHAAZE00000008exon5880521958805463-
GWHAAZE00000008exon5880599558806326-
GWHAAZE00000008CDS5880599558806326-
GWHAAZE00000008CDS5880521958805463-
GWHAAZE00000008CDS5880382058803899-
GWHAAZE00000008CDS5880267558802751-
GWHAAZE00000008CDS5880034858800574-
GWHAAZE00000008CDS5879855858798655-
GWHAAZE00000008CDS5879758858797699-
GWHAAZE00000008CDS5879673658796833-
GWHAAZE00000008CDS5879570158795850-
GWHAAZE00000008CDS5879382458794000-
Transcript Sequence

Network for GWHGAAZE028514

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14249.7Tocopherol_cycl1193037.20E-65
PF14249.7Tocopherol_cycl3214893.20E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09834VTE1, SXD1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0009976molecular_functiontocopherol cyclase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.161
SRR3591706second leaf21.643
SRR3591707mature leaf31.143
SRR3591708Shoot apex13.522
SRR3591709Stem23.050
SRR3591710White floral bud35.301
SRR3591711White flower52.087
SRR3591712Green floral bud29.823
SRR3591713Yellow flower62.356
SRP173429 SRR8316895Juvenile bud stage 17.363
SRR8316896Juvenile bud stage 20.732
SRR8316897Juvenile bud stage 11.026
SRR8316894Third green stage 8.078
SRR8316900Third green stage 30.492
SRR8316901Third green stage 26.855
SRR8316898Complete white stage 19.849
SRR8316899Complete white stage 43.118
SRR8316903Complete white stage 28.820
SRR8316902Silver flowering stage21.155
SRR8316904Silver flowering stage28.392
SRR8316905Silver flowering stage15.880
SRR8316906Gold flowering stage 58.645
SRR8316907Gold flowering stage 53.508
SRR8316908Gold flowering stage 60.175
SRP132670SRR6706286Control31.115
SRR6706287Light intensity 50%29.152
SRR6706288Light intensity 20%31.022
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.343
CNS0095593Slightly white alabastrum(diploid) 210.739
CNS0095594Slightly white alabastrum(diploid) 312.362
CNS0095595Whole white alabastrum(diploid) 212.601
CNS0095596Whole white alabastrum(diploid) 312.377
CNS0095597Whole white alabastrum(diploid) 411.400
CNS0095598Silvery flower (diploied) 121.557
CNS0095599Silvery flower (diploied) 218.008
CNS0095600Silvery flower (diploied) 350.877
CNS0095601Golden flower (diploid) 124.745
CNS0095602Golden flower (diploid) 251.614
CNS0095603Golden flower (diploid) 349.900
CNS0095604Slightly white alabastrum(tetraploid) 112.140
CNS0095605Slightly white alabastrum(tetraploid) 211.206
CNS0095606Slightly white alabastrum(tetraploid) 325.082
CNS0095607Whole white alabastrum(tetraploid) 19.483
CNS0095608Whole white alabastrum(tetraploid) 26.470
CNS0095609Whole white alabastrum(tetraploid) 321.784
CNS0095610Silvery flower (tetraploid) 149.089
CNS0095611Silvery flower (tetraploid) 248.808
CNS0095612Silvery flower (tetraploid) 339.611
CNS0095613Golden flower (tetraploid) 130.640
CNS0095614Golden flower (tetraploid) 251.101
CNS0095615Golden flower (tetraploid) 354.234
CRA001975CRR073297Stem 125.138
CRR073298Stem 223.279
CRR073299Stem 328.170
CRR073300Leaf 129.587
CRR073301Leaf 223.965
CRR073302Leaf 323.570
CRR073303Juvenile bud 135.389
CRR073304Juvenile bud 231.856
CRR073305Juvenile bud 331.755
CRR073306Third green 112.504
CRR073307Third green 211.360
CRR073308Third green 311.048
CRR073309Second white 134.569
CRR073310Second white 226.502
CRR073311Second white 324.065
CRR073312Silver flowering 126.469
CRR073313Silver flowering 232.896
CRR073314Silver flowering 328.255
CRR073315Gold flowering 134.905
CRR073316Gold flowering 245.080
CRR073317Gold flowering 330.509
CRR073318Tawny withering 117.308
CRR073319Tawny withering 214.218
CRR073320Tawny withering 313.983