Gene detail

Detail information of GWHGAAZE028512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002309549.1	2.90336E-32	hypothetical protein POPTR_0006s25640g [Populus trichocarpa]
trEMBL	tr\|B9H903\|B9H903_POPTR	1E-32	Uncharacterized protein {ECO:0000313\|EMBL:EEE93072.1}
TAIR10	AT4G28880.1	2E-12	casein kinase I-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58760512	58761984	+
GWHAAZE00000008	mRNA	58760512	58761984	+
GWHAAZE00000008	exon	58760512	58760524	+
GWHAAZE00000008	exon	58760612	58760694	+
GWHAAZE00000008	exon	58761017	58761083	+
GWHAAZE00000008	exon	58761279	58761421	+
GWHAAZE00000008	exon	58761820	58761984	+
GWHAAZE00000008	CDS	58760512	58760524	+
GWHAAZE00000008	CDS	58760612	58760694	+
GWHAAZE00000008	CDS	58761017	58761083	+
GWHAAZE00000008	CDS	58761279	58761421	+
GWHAAZE00000008	CDS	58761820	58761984	+

Transcript Sequence
>GWHTAAZE028546 ATGGAGTTGGTGGGGTATGAGGCTGATTACGTTTTCGATTGGACCATTCTTAAATACCAGCAATCCCAAGGTCCAAATAAACAGCCTCGATCACCTAATTTACAGCAAGTTTCCGGAATGACCAGCACCCGTGCAATGCCTTTGGATTCGAACAAGCGTCAAGGTTATGGAGATAATGGCGCTTCTCATTTAGTTGAAGCCTCAGATCGCAGAGGATCAAATTATCTCCGACGTCCTGATGGTCACACGCATTTTAGATCGGGAGTAGCGCACAATCTAAATGCTCGTGATTCTGTCGAGAAACACACCATGGACAAAGTAGCCATGCCATCTACTTCATTTTCCTTGTCTGGTGCTTTCAAAAGAAATCATCCAAAACCAGAAGAGTCGGATAATAATGGGCATGGTAATGAAGCTGGGACCTCAAGCAACTGGATGCAATCATTACACCGTATTTCGTCAGCCAAGTAA

Network for GWHGAAZE028512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.272
	SRR3591706	second leaf	20.260
	SRR3591707	mature leaf	32.967
	SRR3591708	Shoot apex	23.635
	SRR3591709	Stem	56.068
	SRR3591710	White floral bud	59.410
	SRR3591711	White flower	66.193
	SRR3591712	Green floral bud	52.233
	SRR3591713	Yellow flower	97.539
SRP173429	SRR8316895	Juvenile bud stage	14.084
	SRR8316896	Juvenile bud stage	24.254
	SRR8316897	Juvenile bud stage	9.010
	SRR8316894	Third green stage	9.919
	SRR8316900	Third green stage	25.156
	SRR8316901	Third green stage	28.844
	SRR8316898	Complete white stage	31.301
	SRR8316899	Complete white stage	65.658
	SRR8316903	Complete white stage	42.693
	SRR8316902	Silver flowering stage	31.486
	SRR8316904	Silver flowering stage	43.765
	SRR8316905	Silver flowering stage	19.049
	SRR8316906	Gold flowering stage	58.637
	SRR8316907	Gold flowering stage	56.106
	SRR8316908	Gold flowering stage	52.809
SRP132670	SRR6706286	Control	34.862
	SRR6706287	Light intensity 50%	35.839
	SRR6706288	Light intensity 20%	39.504
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.960
	CNS0095593	Slightly white alabastrum(diploid) 2	19.700
	CNS0095594	Slightly white alabastrum(diploid) 3	20.378
	CNS0095595	Whole white alabastrum(diploid) 2	15.360
	CNS0095596	Whole white alabastrum(diploid) 3	12.939
	CNS0095597	Whole white alabastrum(diploid) 4	18.727
	CNS0095598	Silvery flower (diploied) 1	37.222
	CNS0095599	Silvery flower (diploied) 2	26.710
	CNS0095600	Silvery flower (diploied) 3	59.843
	CNS0095601	Golden flower (diploid) 1	33.456
	CNS0095602	Golden flower (diploid) 2	59.479
	CNS0095603	Golden flower (diploid) 3	58.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.525
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.142
	CNS0095610	Silvery flower (tetraploid) 1	43.086
	CNS0095611	Silvery flower (tetraploid) 2	36.346
	CNS0095612	Silvery flower (tetraploid) 3	43.651
	CNS0095613	Golden flower (tetraploid) 1	45.018
	CNS0095614	Golden flower (tetraploid) 2	36.380
	CNS0095615	Golden flower (tetraploid) 3	116.321
CRA001975	CRR073297	Stem 1	16.934
	CRR073298	Stem 2	19.864
	CRR073299	Stem 3	15.410
	CRR073300	Leaf 1	20.977
	CRR073301	Leaf 2	18.886
	CRR073302	Leaf 3	14.513
	CRR073303	Juvenile bud 1	20.594
	CRR073304	Juvenile bud 2	16.068
	CRR073305	Juvenile bud 3	31.506
	CRR073306	Third green 1	23.649
	CRR073307	Third green 2	20.626
	CRR073308	Third green 3	23.956
	CRR073309	Second white 1	22.018
	CRR073310	Second white 2	28.889
	CRR073311	Second white 3	20.793
	CRR073312	Silver flowering 1	23.255
	CRR073313	Silver flowering 2	27.036
	CRR073314	Silver flowering 3	20.628
	CRR073315	Gold flowering 1	11.105
	CRR073316	Gold flowering 2	19.110
	CRR073317	Gold flowering 3	11.157
	CRR073318	Tawny withering 1	20.537
	CRR073319	Tawny withering 2	20.422
	CRR073320	Tawny withering 3	23.282