Gene detail

Detail information of GWHGAAZE028437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354239.1	2.58167E-47	PREDICTED: protein NLP7-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	2E-27	Protein NLP3
trEMBL	tr\|M1B296\|M1B296_SOLTU	9E-48	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035445}
TAIR10	AT1G64530.1	4E-19	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	56542472	56544958	-
GWHAAZE00000008	mRNA	56542472	56544958	-
GWHAAZE00000008	exon	56542472	56542854	-
GWHAAZE00000008	exon	56543030	56544086	-
GWHAAZE00000008	exon	56544734	56544958	-
GWHAAZE00000008	CDS	56544734	56544958	-
GWHAAZE00000008	CDS	56543030	56544086	-
GWHAAZE00000008	CDS	56542472	56542854	-

Transcript Sequence
>GWHTAAZE028471 CATAAAGCAGGAGAATCCACTGCAGAAGCTTCCAGCCAATCTTGTACTACCAATGACCGTCTGCTGCGTGATTTCGCTCACAAATGCGGTATAAGGAGGTCTTTGTTTTTGCCCCTCTTCAAACCTTCCAGCTGGTGCTGTTCTGGTGTACTTGAGCTCGTAGATACTTCCAAAAGTGGTTTTTCTTTTTATGGTCTACACAACCTAGCCAAATATATATTTAAGGGGTGTGTACACCAATTACCCCTTGCTCAGATCTGGATTCCATGCTGTCCTAGCACTGCCATGGCCTATGTTGATAGCCTGGGTGAGCGCTGCCATTCCCCTTATTTAAGCTGCAGCAGTAAATTTTCATCATCAATATCTCAGAAAGGTGAAGCATATATCCATTGTGTGATGAATAGCTTCAACTTGTACTGTAATCTTCAGAAATTTAGAAAGGGTCAGAGTGTTGTTGGTAAGGCACTTTTATACCATAAGCCCTTCTTCTGCAGGGATGTAACCAAACTCCCTCCATCTGAGTACCCCTTATCCGATCATGCACGCTTGTGTGGCTTAACTGGATGTTATGCAATTTGGTTGCATAGTACATGCACTAAGAGTCATGATTATGTGCTAGAGTTCTACCTTCTCCCTTGGAACACAATCTCTAGAGATCCGCAGACATACTTGGAGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCGGGTTTTAAAATTGGTTCAGTGGGAGAGGAATCATGTGTTGAAGTATGTGAAATTTTTGTGAATGATGATGAACCTGATTCTGTTATGATATCCCAAACTACTAGTGTTCAGCCCATACCCGAATCCTTTGCAAAGGAAAGGGAAACGGTGCAGAATGAAGGGGTAGGCGAAACTGTTATAGACAAGGGATCAAATATTCTTGGTTGGGAACAAAATAGCATAGTTGTTTGTCATTCAGAGAAAAAAGCTGTAGAGGAATTGTTTGTTGAAGCTGCTACGAATGATGAAATAACAGTAAGTCTTCCACCCATGCCTGAATCCATGCGAAATGAAAATGAAGTGGTGCAGCAGCTATCAGATGATGAGCCAACCATGGAAGAATCTGTTAGAAAGAATGAATATAATGTTGCGATAGTAAAGCAAACCAGTGCGGCTATTGCATTTTCGGAGAGAATATTCAGCAGAGCAGAGGCATCAGAGAGATTATATAGAACAACTGACATTTCATTAAGTCGCGAGGATCTCATAAAACATTTTGGAAAGAAACTTGACGATGCAGCACATATACTTGGGGTTAGTAGGTCTACAATGAAGCGCACGTGCAGACTTCATAAAATCAAGAAGTGGCCATTTCCAAAGAGAAAGAAGGTTAATGCCCTTCACGTTCACAGTTGCAATGAAGGAATTGAAGGAACTTACAAGGGTAACCCATCATGTTCTGACCCACCTCCTGGGCCCGCCACAGCAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAACAAGATGTGGGAACTGTGACCATAAAGGCAACACATGGAGGATATACTATTCGGTTTCAGCTCCCATATTTATCAAGAAAGTCGGACTTAGTGGAGAAGGTGACAACGAGGCTGTCGTTGAATGAAGGATCTTTTAATATCCAGTACCAGGACGAAGAGAATGAGTGGATTTGA

Network for GWHGAAZE028437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	406	453	4.30E-14
PF00564.25	PB1	502	554	2.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.874
	SRR3591706	second leaf	0.208
	SRR3591707	mature leaf	0.192
	SRR3591708	Shoot apex	0.306
	SRR3591709	Stem	5.680
	SRR3591710	White floral bud	0.080
	SRR3591711	White flower	0.557
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.127
	SRR8316896	Juvenile bud stage	0.087
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.273
	SRR8316900	Third green stage	0.210
	SRR8316901	Third green stage	0.130
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.162
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.087
	SRR6706287	Light intensity 50%	0.125
	SRR6706288	Light intensity 20%	0.098
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.438
	CNS0095593	Slightly white alabastrum(diploid) 2	0.111
	CNS0095594	Slightly white alabastrum(diploid) 3	0.301
	CNS0095595	Whole white alabastrum(diploid) 2	0.824
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.157
	CNS0095598	Silvery flower (diploied) 1	1.824
	CNS0095599	Silvery flower (diploied) 2	2.886
	CNS0095600	Silvery flower (diploied) 3	0.786
	CNS0095601	Golden flower (diploid) 1	4.544
	CNS0095602	Golden flower (diploid) 2	1.005
	CNS0095603	Golden flower (diploid) 3	0.927
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.243
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.040
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.088
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.072
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.085
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.008
	CNS0095614	Golden flower (tetraploid) 2	0.028
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.154
	CRR073298	Stem 2	0.133
	CRR073299	Stem 3	0.164
	CRR073300	Leaf 1	0.125
	CRR073301	Leaf 2	0.224
	CRR073302	Leaf 3	0.325
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.147
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.106
	CRR073316	Gold flowering 2	0.178
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.131
	CRR073319	Tawny withering 2	2.483
	CRR073320	Tawny withering 3	3.118