Gene detail

Detail information of GWHGAAZE028415

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355325.1	4.3281E-162	PREDICTED: ferrochelatase-2, chloroplastic-like [Solanum tuberosum]
COG	YP_007111200.1	2E-103	ferrochelatase
Swissprot	tr\|P42045\|HEMH_HORVU	6E-152	Ferrochelatase-2, chloroplastic (Precursor)
trEMBL	tr\|M0ZQ63\|M0ZQ63_SOLTU	2E-162	Ferrochelatase {ECO:0000256\|RuleBase:RU000607}
TAIR10	AT5G26030.2	4E-114	ferrochelatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	55362041	55368527	+
GWHAAZE00000008	mRNA	55362041	55368527	+
GWHAAZE00000008	exon	55362041	55362268	+
GWHAAZE00000008	exon	55362714	55362857	+
GWHAAZE00000008	exon	55363464	55363589	+
GWHAAZE00000008	exon	55365276	55365379	+
GWHAAZE00000008	exon	55365811	55365946	+
GWHAAZE00000008	exon	55367013	55367113	+
GWHAAZE00000008	exon	55368323	55368527	+
GWHAAZE00000008	CDS	55362041	55362268	+
GWHAAZE00000008	CDS	55362714	55362857	+
GWHAAZE00000008	CDS	55363464	55363589	+
GWHAAZE00000008	CDS	55365276	55365379	+
GWHAAZE00000008	CDS	55365811	55365946	+
GWHAAZE00000008	CDS	55367013	55367113	+
GWHAAZE00000008	CDS	55368323	55368527	+

Transcript Sequence
>GWHTAAZE028449 ATGGCTTCACCTTTTGATCCTACTAACAAAAGAAGCAGTATGCCTGGAGAATTGTACCTTCATGATTCCATTCGAAAAAGAAGCATTTCTAGCATGAATTCTGAAAGTGCTGTTGAATCTCCTTTGTTCATGGAGGAGGAAAAGATTGGAGTGCTGCTTTTGAATCTTGGAGGACCAGAGACACTTTGTGATGTTCAGCCATTTTTGTTCAATTTATTTGTAGACCCGGATATCTTACGTCTCCCAAGGTTGTTTAAGTTCCTATTGCGACCCTTAGCGCAACTCATATCAGTACTCGTGGCTCCTGGAATTAAAAGAAGGTATGCTGCCATTGGAGGTGGTTCGCCTTTGCGGAAAATAACATTTGATCAGGCAAATGCTCTTAAAATGGTACTGGACACAAAGCAAGTCCCTGCAAATGTCTATGTTGGTATGCGTTACTGGCACCCTTTCATTGAGGAAGCTGTTCAACAGGCAAGTTTCGAGTTGTGTAGCAATATTAAGGAGGACCGTATTACAAAGCTTGTAGTCTTGCCTCTATATCCTCAGTTTTCCATCTCTACAACTGGCTCAAGTATCCGTGTTCTCGAAAGCATCTTCAGTGCCCACGGGGTGCCGGTCAGCTATGTTGAGAGTGCAGGTGATCCATACAGAGATCAGATAGAGGAATGCATTTACTTGATAATGCAAGAACTGAAAGCAAGGGGAATTACCAATGATCATACTTTGGCTTACCAGAGCCGAGTTGGGCCATTAAAATGGTTGAAGCCCTACACTAATGAGGTTCTTGTTGAACTCGGCCAAAGAGGTTACAAGAGTCTCCTGGCTGTTCCCGTAAGCTTTGTGAGTGAACACATAGAGACTCTTGAAGAGATTGATATGAGGTACAAGGAGTTAGCCCTCAAATCTGGAATTCAAAACTGGGGTCGGGTCCCGACTTTAGGTTGTGTGCCTAATTTCATCGCCGATTTGGTAGACGCTGTCATCGACGCCTTGCCTTGTGCCGCAGCAATGCCAGCAATGGTGGATCCAAAAATTACATAA

Network for GWHGAAZE028415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00762.20	Ferrochelatase	48	196	1.40E-39
PF00762.20	Ferrochelatase	199	330	2.90E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01772	hemH, FECH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006783	biological_process	heme biosynthetic process
GO:0004325	molecular_function	ferrochelatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.172
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.936
	SRR3591711	White flower	5.951
	SRR3591712	Green floral bud	0.052
	SRR3591713	Yellow flower	5.246
SRP173429	SRR8316895	Juvenile bud stage	0.034
	SRR8316896	Juvenile bud stage	0.029
	SRR8316897	Juvenile bud stage	0.009
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	1.329
	SRR8316904	Silver flowering stage	1.921
	SRR8316905	Silver flowering stage	0.732
	SRR8316906	Gold flowering stage	4.602
	SRR8316907	Gold flowering stage	4.424
	SRR8316908	Gold flowering stage	3.017
SRP132670	SRR6706286	Control	0.013
	SRR6706287	Light intensity 50%	0.013
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.151
	CNS0095594	Slightly white alabastrum(diploid) 3	0.062
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.048
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.899
	CNS0095599	Silvery flower (diploied) 2	0.359
	CNS0095600	Silvery flower (diploied) 3	1.218
	CNS0095601	Golden flower (diploid) 1	1.032
	CNS0095602	Golden flower (diploid) 2	1.923
	CNS0095603	Golden flower (diploid) 3	1.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.039
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.043
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	1.313
	CNS0095611	Silvery flower (tetraploid) 2	1.737
	CNS0095612	Silvery flower (tetraploid) 3	2.913
	CNS0095613	Golden flower (tetraploid) 1	1.048
	CNS0095614	Golden flower (tetraploid) 2	0.831
	CNS0095615	Golden flower (tetraploid) 3	1.398
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.013
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.066
	CRR073306	Third green 1	3.681
	CRR073307	Third green 2	3.401
	CRR073308	Third green 3	3.838
	CRR073309	Second white 1	11.094
	CRR073310	Second white 2	8.581
	CRR073311	Second white 3	8.586
	CRR073312	Silver flowering 1	9.248
	CRR073313	Silver flowering 2	7.757
	CRR073314	Silver flowering 3	6.372
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.194
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	0.000