Gene detail

Detail information of GWHGAAZE028144

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011082117.1	PREDICTED: glucan endo-1,3-beta-glucosidase 5 [Sesamum indicum]
Swissprot	tr\|Q9M088\|E135_ARATH	Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBL	tr\|A0A022RBR5\|A0A022RBR5_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU37424.1}
TAIR10	AT4G31140.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	42224451	42229024	+
GWHAAZE00000008	mRNA	42224451	42229024	+
GWHAAZE00000008	exon	42224451	42224794	+
GWHAAZE00000008	exon	42227625	42228169	+
GWHAAZE00000008	exon	42228459	42229024	+
GWHAAZE00000008	CDS	42224451	42224794	+
GWHAAZE00000008	CDS	42227625	42228169	+
GWHAAZE00000008	CDS	42228459	42229024	+

Transcript Sequence
>GWHTAAZE028178 ATGGGTAATTTAAGGGCTGAGATTGGGGTGGTAGTGTTACTATTCATGTGGGTTAGTTCATCAGTAGTAGTGAATGGAATAGGGGCAAATTGGGGAACACAAGATACTCACCCACTGCCAGAATCAACTGTGGTGAAGTTGTTGAAGGATAATGGGTTCCAAAAAGTGAAGCTGTTTGATGCAGATTCAGCGACTCTGAATGCACTGGCTGGGTCTGGGTTAGAGGTTATGGTGGGGATTCCAAATGAGATGTTGCCCTCTTTGGCTAATAGTCTTGAGTCTGCTGAGAGATGGGTTCAGAAGAATGTCTCTGCTCATGTTTCTTCTAATAGTCTTAACATCAAGTACGTTGCAGTCGGAAACGAACCATTCTTGGCTGCGTACAATGGAAGTTTCCTAGACTCAACATACCCCGCCCTCCAAAACATTCAAGCAGCCCTTATAAAAGCCGGCCTAGGCAGCCAAGTCAAAGTCACAGTCCCACTCAACGCCGACGTGTACCAGAGCTCAACGAACCTCCCATCAACCGGCGATTTCCGGCCAGACATCCATGACCTCATGATCCAAATCATCAAGTTCTTGAGCGACAACGCCGCCCCATTCACCATCAATATCTATCCCTTCATAAGTCTCTACAACGACCCCAACTTCCCCGTCGACTATGCCTTCTTCGACGGCTACTCTTCCTCCATCAACGACAATGGCCAAGTCTACAACAACGTGTTTGATGCCAATTATGACACGCTCGTGTGGTCCCTACAGAAGAATGGGTACGGGAACATGTCCATAATCGTTGGGGAAATTGGGTGGCCGACGGATGGGGATATTAATGCGAATATAAAGTATGCCCAAAGGTTCAATCAAGGGTTCATGTCCCATGTCGCCAAGGGAACCCCAATGAGGCCAGGCCCTGTTGATGCCTACTTGTTTAGCCTCATAGACGAGGATGCCAAGAGCATTCAACCGGGCAACTTCGAGCGCCACTGGGGAGTATTCAACTATGATGGGACCCCCAAGTACAATCTTAGAATAGGCACAACGAACTCAGGTGGTTTAGCACTGGCAAGTGGGATCCGGTACCTGCCCCGTCGTTGGTGCGTGCTTTCAGATTCAGCTAGCCTTGATAACCCTCAAATCGGCAATAGTGTGAGCTATGCGTGTGCCAATGCTGACTGCACGGCTCTCGGGTACGGTACTTCGTGCTCGAATTTGGACGCGAAGGGTAACATTTCGTATGCGTTCAACAGCTACTACCAGCAGAACAACCAGCTTGACAGTGCGTGCGCGTTTCCAAACCTCTCCGTTATAACAAATACTGACCCATCTGTCGGTGACTGCAAGTTCAAAATCATGATCCAAACGATTAGTTCGCGTTCGAACTTGAGTAGTGGATCTTTCAAAAATTGTATTGGTATGGTGCCTTTTGTGTTTATGCTGCTGTTAATAGTTATTTAA

Network for GWHGAAZE028144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	27	342	5.00E-68
PF07983.14	X8	365	432	5.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19893	GN5_6	Metabolic pathways	map01100
K19893	GN5_6	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.743
	SRR3591706	second leaf	3.858
	SRR3591707	mature leaf	5.370
	SRR3591708	Shoot apex	6.019
	SRR3591709	Stem	53.527
	SRR3591710	White floral bud	8.891
	SRR3591711	White flower	8.509
	SRR3591712	Green floral bud	3.004
	SRR3591713	Yellow flower	6.798
SRP173429	SRR8316895	Juvenile bud stage	3.791
	SRR8316896	Juvenile bud stage	2.114
	SRR8316897	Juvenile bud stage	1.766
	SRR8316894	Third green stage	0.633
	SRR8316900	Third green stage	2.314
	SRR8316901	Third green stage	2.082
	SRR8316898	Complete white stage	1.131
	SRR8316899	Complete white stage	2.079
	SRR8316903	Complete white stage	2.002
	SRR8316902	Silver flowering stage	1.651
	SRR8316904	Silver flowering stage	1.874
	SRR8316905	Silver flowering stage	1.743
	SRR8316906	Gold flowering stage	1.292
	SRR8316907	Gold flowering stage	2.796
	SRR8316908	Gold flowering stage	3.022
SRP132670	SRR6706286	Control	1.503
	SRR6706287	Light intensity 50%	1.241
	SRR6706288	Light intensity 20%	1.690
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.113
	CNS0095593	Slightly white alabastrum(diploid) 2	2.580
	CNS0095594	Slightly white alabastrum(diploid) 3	2.295
	CNS0095595	Whole white alabastrum(diploid) 2	1.593
	CNS0095596	Whole white alabastrum(diploid) 3	1.864
	CNS0095597	Whole white alabastrum(diploid) 4	0.984
	CNS0095598	Silvery flower (diploied) 1	1.106
	CNS0095599	Silvery flower (diploied) 2	0.621
	CNS0095600	Silvery flower (diploied) 3	4.817
	CNS0095601	Golden flower (diploid) 1	0.178
	CNS0095602	Golden flower (diploid) 2	2.410
	CNS0095603	Golden flower (diploid) 3	1.948
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.579
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.950
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.787
	CNS0095610	Silvery flower (tetraploid) 1	5.050
	CNS0095611	Silvery flower (tetraploid) 2	7.022
	CNS0095612	Silvery flower (tetraploid) 3	2.808
	CNS0095613	Golden flower (tetraploid) 1	0.946
	CNS0095614	Golden flower (tetraploid) 2	0.692
	CNS0095615	Golden flower (tetraploid) 3	6.957
CRA001975	CRR073297	Stem 1	7.004
	CRR073298	Stem 2	3.378
	CRR073299	Stem 3	9.071
	CRR073300	Leaf 1	3.082
	CRR073301	Leaf 2	2.103
	CRR073302	Leaf 3	3.799
	CRR073303	Juvenile bud 1	3.565
	CRR073304	Juvenile bud 2	1.250
	CRR073305	Juvenile bud 3	2.712
	CRR073306	Third green 1	13.409
	CRR073307	Third green 2	15.528
	CRR073308	Third green 3	9.319
	CRR073309	Second white 1	0.687
	CRR073310	Second white 2	1.282
	CRR073311	Second white 3	0.615
	CRR073312	Silver flowering 1	1.026
	CRR073313	Silver flowering 2	0.311
	CRR073314	Silver flowering 3	0.240
	CRR073315	Gold flowering 1	1.559
	CRR073316	Gold flowering 2	1.150
	CRR073317	Gold flowering 3	0.908
	CRR073318	Tawny withering 1	9.582
	CRR073319	Tawny withering 2	10.300
	CRR073320	Tawny withering 3	11.159