Gene detail

Detail information of GWHGAAZE028063

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI29216.3	1.327E-143	unnamed protein product [Vitis vinifera]
COG	YP_004639880.1	2E-10	beta/alpha-amylase
Swissprot	tr\|Q9FH80\|BAM8_ARATH	2E-107	Beta-amylase 8
trEMBL	tr\|F6HJ37\|F6HJ37_VITVI	8E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52234.1}
TAIR10	AT5G45300.1	3E-90	beta-amylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	36951604	36956367	+
GWHAAZE00000008	mRNA	36951604	36956367	+
GWHAAZE00000008	exon	36951604	36951864	+
GWHAAZE00000008	exon	36952901	36953113	+
GWHAAZE00000008	exon	36956143	36956367	+
GWHAAZE00000008	CDS	36951604	36951864	+
GWHAAZE00000008	CDS	36952901	36953113	+
GWHAAZE00000008	CDS	36956143	36956367	+

Transcript Sequence
>GWHTAAZE028097 TGTTACGATAAATACTCACAACAGAATCTACGCAAAGCTGCAAAATTACGTGGGCACTCCTTCTGGGCCAGAGGGCCTGATAATGCTGGTCATTACAATTCTAGGCCAAATGAAACTGGTTTTTTCTGTGATCGAGGCGATTATGATAGCTATTATGGTCGTTTTTTTCTCCAGTGGTATTCTCACTCCTTAATAGATCACGCTGATAATGTCCTTTCCCTTGCAAGCCTTGCATTTGAGGACATACGGATAATTGTGAAGATTCCATCAGTCTATTGGTGGTACAGATCTACAAGCCATGCAGCAGAGCTCACAGCTGGATACTATAACCCTACAAACCAGGATGGATACTCTCCAGTTTTTGAGGTTCTTAAGAAACACTCTGTGACAATGACATTTGTGTGCTCAGGATTGCAGGTCTCTTGTCAGGAAATTAATGAAGCATTGGCTGATCCTGAAGGCTTGAGTTGGCAGGTTTTAAATTCGGCTTGGGATAGAGGGTTGACTTTAGCCGGCCAAAATGCATTGCCATGTTATGATAGAGAAGGATTCATGAGAATTGTTGAGACCGCAAAGCCAAGAAATGATCCCGATCGCCGCCACTTCTCCTTCTTTACATTTCAACTCCCACAACCTTTTGCTCAAAGCTTCTCAGAAGTGGACTACTTTGTTAAATGCATGCATGGTATGATTTCTTGA

Network for GWHGAAZE028063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	1	197	1.60E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.325
	SRR3591706	second leaf	18.037
	SRR3591707	mature leaf	12.496
	SRR3591708	Shoot apex	26.462
	SRR3591709	Stem	15.043
	SRR3591710	White floral bud	8.819
	SRR3591711	White flower	8.310
	SRR3591712	Green floral bud	23.231
	SRR3591713	Yellow flower	3.417
SRP173429	SRR8316895	Juvenile bud stage	16.999
	SRR8316896	Juvenile bud stage	20.721
	SRR8316897	Juvenile bud stage	9.821
	SRR8316894	Third green stage	9.799
	SRR8316900	Third green stage	23.020
	SRR8316901	Third green stage	23.941
	SRR8316898	Complete white stage	5.449
	SRR8316899	Complete white stage	25.464
	SRR8316903	Complete white stage	8.958
	SRR8316902	Silver flowering stage	3.705
	SRR8316904	Silver flowering stage	3.556
	SRR8316905	Silver flowering stage	2.029
	SRR8316906	Gold flowering stage	5.966
	SRR8316907	Gold flowering stage	4.428
	SRR8316908	Gold flowering stage	6.517
SRP132670	SRR6706286	Control	15.298
	SRR6706287	Light intensity 50%	15.503
	SRR6706288	Light intensity 20%	17.938
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.859
	CNS0095593	Slightly white alabastrum(diploid) 2	23.663
	CNS0095594	Slightly white alabastrum(diploid) 3	18.813
	CNS0095595	Whole white alabastrum(diploid) 2	19.697
	CNS0095596	Whole white alabastrum(diploid) 3	21.476
	CNS0095597	Whole white alabastrum(diploid) 4	19.870
	CNS0095598	Silvery flower (diploied) 1	15.540
	CNS0095599	Silvery flower (diploied) 2	13.336
	CNS0095600	Silvery flower (diploied) 3	12.219
	CNS0095601	Golden flower (diploid) 1	14.575
	CNS0095602	Golden flower (diploid) 2	12.521
	CNS0095603	Golden flower (diploid) 3	10.911
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.666
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.386
	CNS0095610	Silvery flower (tetraploid) 1	13.103
	CNS0095611	Silvery flower (tetraploid) 2	11.107
	CNS0095612	Silvery flower (tetraploid) 3	15.650
	CNS0095613	Golden flower (tetraploid) 1	10.417
	CNS0095614	Golden flower (tetraploid) 2	9.400
	CNS0095615	Golden flower (tetraploid) 3	3.095
CRA001975	CRR073297	Stem 1	26.211
	CRR073298	Stem 2	18.393
	CRR073299	Stem 3	13.523
	CRR073300	Leaf 1	22.116
	CRR073301	Leaf 2	19.574
	CRR073302	Leaf 3	13.048
	CRR073303	Juvenile bud 1	15.382
	CRR073304	Juvenile bud 2	11.533
	CRR073305	Juvenile bud 3	13.764
	CRR073306	Third green 1	2.469
	CRR073307	Third green 2	4.099
	CRR073308	Third green 3	4.221
	CRR073309	Second white 1	2.340
	CRR073310	Second white 2	1.635
	CRR073311	Second white 3	2.842
	CRR073312	Silver flowering 1	1.018
	CRR073313	Silver flowering 2	3.410
	CRR073314	Silver flowering 3	1.543
	CRR073315	Gold flowering 1	4.993
	CRR073316	Gold flowering 2	7.355
	CRR073317	Gold flowering 3	4.721
	CRR073318	Tawny withering 1	5.747
	CRR073319	Tawny withering 2	9.260
	CRR073320	Tawny withering 3	8.049