Gene detail

Detail information of GWHGAAZE027936

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	4E-87	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	3E-139	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32129737	32130937	+
GWHAAZE00000008	mRNA	32129737	32130937	+
GWHAAZE00000008	exon	32129737	32130591	+
GWHAAZE00000008	exon	32130686	32130937	+
GWHAAZE00000008	CDS	32129737	32130591	+
GWHAAZE00000008	CDS	32130686	32130937	+

Transcript Sequence
>GWHTAAZE027970 ATGTATGTTTTATCTGAAATCTTTCAACCATGTTCTTTATCCCCTCCTTTTGCAGGATATTTGCCAGGAAGGTTATATGATCTCAATTCAAAATATGGGAATGAAGCCGAATTAAAAGCTTTAATTAATGCCTTCCGTAGTAAAGGTGTAAAATGCATAGCTGACATAGAAATAAATCACAGAACTGCAGAGAAACAAGATAGTAAAGGGATATGGTGCATATTTGAAGGAGGAACAGCTGATGACCGTCTAGACTGGGGACCATCCCTCATTTGCAAAGACGATAAGAATTACTCCGATGGCCTAGGAAACCTTGATACTGGAACCGACTTTCCGTATGCTCCCGATATTGACCATCTTAACCCTAGGGTGCAAAGAGAGTTATCCGATTGGATGAATTGGCTAAAGACTGAAATTGGATTTGTCGGGTGGCGATTTGACTTTGCTGCGGGCTACTCTCCTAGTATCACTAAGGTCTATATGCGAAAAACTTCCCCCAATTTTGCAGTCGGGGAATTCTGGAATTCACTTTCATATGAGCAAAATGGAAAACCATCATATAACCAGGACCAACATCGTAATAAGTTGGCTCAGTGGGTCAAAAATAGTGGTGGAGTTGTGACTGCGTTTGATTTCACAACCAAGGGAATTCTTCAGGCTGCGGTGAAGGGAGAATTGTGGAGAATGAAGGACTCGAATGGAAATCCTCCGGGGATGATTGGGATTTTACCGGGAAATGCTGTCACCTTTATTGATAATCACGATACCTATTCGCAAAATTTATGGCCATTTCCGTCAGATAAAGTCCTTCAAGGATATGTCTATATTCTCACTCATCCGGGGGTACCATCATTGTTTTATAACCACTTCTTTGAATGGGGACTGAAGGATGAAATTATCAAATTGACTAAAATTAGGGCAAGGAATAGGATCAGTTCAACAAGCAAAGTGAAAATCATGGTAGCTAATTCAGATTTATGCGTCATGATGATCGATGACAAAGTTATTGCAAAGATTGGGCCAAAGTATGCTGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGTTAGACTATTGTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027936

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	17	174	1.80E-08
PF07821.13	Alpha-amyl_C2	308	366	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.443
	SRR3591706	second leaf	0.440
	SRR3591707	mature leaf	0.093
	SRR3591708	Shoot apex	0.345
	SRR3591709	Stem	23.008
	SRR3591710	White floral bud	0.683
	SRR3591711	White flower	0.827
	SRR3591712	Green floral bud	0.108
	SRR3591713	Yellow flower	0.241
SRP173429	SRR8316895	Juvenile bud stage	0.063
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.018
	SRR8316901	Third green stage	0.008
	SRR8316898	Complete white stage	0.063
	SRR8316899	Complete white stage	0.027
	SRR8316903	Complete white stage	0.167
	SRR8316902	Silver flowering stage	0.087
	SRR8316904	Silver flowering stage	0.142
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	0.145
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.221
SRP132670	SRR6706286	Control	0.100
	SRR6706287	Light intensity 50%	0.064
	SRR6706288	Light intensity 20%	0.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.020
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.021
	CNS0095596	Whole white alabastrum(diploid) 3	0.053
	CNS0095597	Whole white alabastrum(diploid) 4	0.005
	CNS0095598	Silvery flower (diploied) 1	1.741
	CNS0095599	Silvery flower (diploied) 2	0.723
	CNS0095600	Silvery flower (diploied) 3	0.440
	CNS0095601	Golden flower (diploid) 1	1.353
	CNS0095602	Golden flower (diploid) 2	1.065
	CNS0095603	Golden flower (diploid) 3	1.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.093
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.052
	CNS0095610	Silvery flower (tetraploid) 1	0.377
	CNS0095611	Silvery flower (tetraploid) 2	0.496
	CNS0095612	Silvery flower (tetraploid) 3	0.189
	CNS0095613	Golden flower (tetraploid) 1	0.270
	CNS0095614	Golden flower (tetraploid) 2	0.206
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	0.008
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.023
	CRR073301	Leaf 2	0.078
	CRR073302	Leaf 3	0.043
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.015
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	0.335
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.139
	CRR073309	Second white 1	0.012
	CRR073310	Second white 2	0.063
	CRR073311	Second white 3	0.154
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.017
	CRR073314	Silver flowering 3	0.275
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.040
	CRR073317	Gold flowering 3	0.039
	CRR073318	Tawny withering 1	5.102
	CRR073319	Tawny withering 2	5.844
	CRR073320	Tawny withering 3	8.443