Gene detail

Detail information of GWHGAAZE027929

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	1E-81	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	1E-178	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	2E-133	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32030195	32031389	+
GWHAAZE00000008	mRNA	32030195	32031389	+
GWHAAZE00000008	exon	32030195	32031043	+
GWHAAZE00000008	exon	32031138	32031389	+
GWHAAZE00000008	CDS	32030195	32031043	+
GWHAAZE00000008	CDS	32031138	32031389	+

Transcript Sequence
>GWHTAAZE027963 ATGTATGTTTTATCTGAAATCTCTCAACCATGTTCTTTATCCCTCCTTTGCGGGATATTTGCCGGAAGGTTATATGATCTCAATTCAAAATATGGGAATGAAGAATTAAAAGCTTTAATTAATGCCTTCCGTAGTAAAGGTGTAAAATGCATAGGCGACATAGAAATAAACCACGAACCTGCAGAGAAACAAGATAGTAGAGGGATATGGTGCATATTTGAAGGAGGAACAGCTGATGACCGTCTAGACTGGGGACCATCCCTCATTTGCAAAGACGATAAGAATTACTCCGATGGCCTAGGAAACCTTGATACTGGAACCGACTTTCCGTATGCTCCCGATATTGACCATCTTAACCCTAGGGTGCAAAGAGAGTTATCCGATTGGATGAATTGGCTAAAGACTGAAATTGGATTTGTCGGGTGGCGATTTGACTTTGCTGCGGGCTACTCTCCTAGTATCACTAAGGTCTATATGCGAAAAACTTCCCCCAATTTTGCAGTCGGGGAATTCTGGAATTCACTTTCATATGAGCAAAATGGAAAACCATCATATAACCAGGACCAACATCGTAATAAGTTGGCTCAGTGGGTCAAAAATAGTGGTGGAGTTGTGACTGCGTTTGATTTCACAACCAAGGGAATTCTTCAGGCTGCGGTGAAGGGAGAATTGTGGAGAATGAAGGACTCGAATGGAAATCCTCCGGGGATGATTGGGATTTTACCGGGAAATGCTGTCACCTTTATTGATAATCACGATACCTATTCGCAAAATTTATGGCCATTTCCGTCAGATAAAGTCCTTCAAGGATATGTCTATATTCTCACTCATCCGGGGGTACCATCATTGTTTTATGACCACTTCTTTGAATGGGGACTAAAGGATGAAATTATCAAATTGACTAAAATTAGGGCAAGGAATAGGATCAGTTCAACAAGCAAAGTGAAAATCATGGTAGCGAATTCAGATTTGTACGTCGCAATGATCGATGACAAAGTTATTGCAAAGATTGGGCCAAAGTATGCTGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGTTAGACTATTGTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	25	172	2.40E-05
PF07821.13	Alpha-amyl_C2	306	364	9.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.739
	SRR3591706	second leaf	0.132
	SRR3591707	mature leaf	0.075
	SRR3591708	Shoot apex	0.071
	SRR3591709	Stem	19.286
	SRR3591710	White floral bud	0.485
	SRR3591711	White flower	0.229
	SRR3591712	Green floral bud	0.095
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.012
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.019
	SRR8316899	Complete white stage	0.013
	SRR8316903	Complete white stage	0.117
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.031
	SRR8316905	Silver flowering stage	0.009
	SRR8316906	Gold flowering stage	0.007
	SRR8316907	Gold flowering stage	0.064
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.103
	SRR6706287	Light intensity 50%	0.019
	SRR6706288	Light intensity 20%	0.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.084
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.007
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.027
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	2.868
	CNS0095599	Silvery flower (diploied) 2	0.880
	CNS0095600	Silvery flower (diploied) 3	0.388
	CNS0095601	Golden flower (diploid) 1	4.302
	CNS0095602	Golden flower (diploid) 2	1.708
	CNS0095603	Golden flower (diploid) 3	1.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.032
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.131
	CNS0095610	Silvery flower (tetraploid) 1	0.157
	CNS0095611	Silvery flower (tetraploid) 2	0.405
	CNS0095612	Silvery flower (tetraploid) 3	0.052
	CNS0095613	Golden flower (tetraploid) 1	0.203
	CNS0095614	Golden flower (tetraploid) 2	0.019
	CNS0095615	Golden flower (tetraploid) 3	0.006
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.103
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.009
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.020
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.007
	CRR073312	Silver flowering 1	0.010
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.039
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.040
	CRR073317	Gold flowering 3	0.032
	CRR073318	Tawny withering 1	6.280
	CRR073319	Tawny withering 2	9.298
	CRR073320	Tawny withering 3	12.996