Detail information of GWHGAAZE027887


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009800757.10PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q8RY59|RCD1_ARATH3E-141Inactive poly [ADP-ribose] polymerase RCD1
trEMBLtr|B9MU68|B9MU68_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP64925.1}
TAIR10AT1G32230.32E-122WWE protein-protein interaction domain protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3096068730969321-
GWHAAZE00000008mRNA3096068730969321-
GWHAAZE00000008exon3096823730969321-
GWHAAZE00000008exon3096411730964358-
GWHAAZE00000008exon3096361430963717-
GWHAAZE00000008exon3096275530962818-
GWHAAZE00000008exon3096240530962661-
GWHAAZE00000008exon3096219330962313-
GWHAAZE00000008exon3096087530960968-
GWHAAZE00000008exon3096068730960768-
GWHAAZE00000008CDS3096823730969321-
GWHAAZE00000008CDS3096411730964358-
GWHAAZE00000008CDS3096361430963717-
GWHAAZE00000008CDS3096275530962818-
GWHAAZE00000008CDS3096240530962661-
GWHAAZE00000008CDS3096219330962313-
GWHAAZE00000008CDS3096087530960968-
GWHAAZE00000008CDS3096068730960768-
Transcript Sequence

Network for GWHGAAZE027887

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00644.21PARP3083901.10E-06
PF12174.9RST5506141.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.620
SRR3591706second leaf50.039
SRR3591707mature leaf53.846
SRR3591708Shoot apex62.385
SRR3591709Stem95.891
SRR3591710White floral bud93.071
SRR3591711White flower105.390
SRR3591712Green floral bud59.177
SRR3591713Yellow flower111.833
SRP173429 SRR8316895Juvenile bud stage 39.572
SRR8316896Juvenile bud stage 46.552
SRR8316897Juvenile bud stage 26.026
SRR8316894Third green stage 20.411
SRR8316900Third green stage 46.895
SRR8316901Third green stage 45.489
SRR8316898Complete white stage 38.116
SRR8316899Complete white stage 84.648
SRR8316903Complete white stage 62.573
SRR8316902Silver flowering stage42.044
SRR8316904Silver flowering stage58.856
SRR8316905Silver flowering stage26.067
SRR8316906Gold flowering stage 81.295
SRR8316907Gold flowering stage 68.992
SRR8316908Gold flowering stage 85.851
SRP132670SRR6706286Control33.650
SRR6706287Light intensity 50%34.847
SRR6706288Light intensity 20%36.805
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.570
CNS0095593Slightly white alabastrum(diploid) 242.045
CNS0095594Slightly white alabastrum(diploid) 334.386
CNS0095595Whole white alabastrum(diploid) 243.311
CNS0095596Whole white alabastrum(diploid) 328.420
CNS0095597Whole white alabastrum(diploid) 438.518
CNS0095598Silvery flower (diploied) 161.159
CNS0095599Silvery flower (diploied) 250.909
CNS0095600Silvery flower (diploied) 395.712
CNS0095601Golden flower (diploid) 154.905
CNS0095602Golden flower (diploid) 293.825
CNS0095603Golden flower (diploid) 390.946
CNS0095604Slightly white alabastrum(tetraploid) 139.702
CNS0095605Slightly white alabastrum(tetraploid) 234.174
CNS0095606Slightly white alabastrum(tetraploid) 382.375
CNS0095607Whole white alabastrum(tetraploid) 134.538
CNS0095608Whole white alabastrum(tetraploid) 234.757
CNS0095609Whole white alabastrum(tetraploid) 353.217
CNS0095610Silvery flower (tetraploid) 1104.984
CNS0095611Silvery flower (tetraploid) 2104.251
CNS0095612Silvery flower (tetraploid) 3107.869
CNS0095613Golden flower (tetraploid) 170.998
CNS0095614Golden flower (tetraploid) 298.651
CNS0095615Golden flower (tetraploid) 3137.876
CRA001975CRR073297Stem 146.464
CRR073298Stem 243.483
CRR073299Stem 337.826
CRR073300Leaf 148.433
CRR073301Leaf 237.360
CRR073302Leaf 335.082
CRR073303Juvenile bud 132.949
CRR073304Juvenile bud 228.314
CRR073305Juvenile bud 337.549
CRR073306Third green 134.669
CRR073307Third green 228.249
CRR073308Third green 336.816
CRR073309Second white 136.226
CRR073310Second white 251.916
CRR073311Second white 343.165
CRR073312Silver flowering 145.174
CRR073313Silver flowering 235.037
CRR073314Silver flowering 340.231
CRR073315Gold flowering 126.404
CRR073316Gold flowering 244.572
CRR073317Gold flowering 321.460
CRR073318Tawny withering 146.237
CRR073319Tawny withering 263.052
CRR073320Tawny withering 357.254