Gene detail

Detail information of GWHGAAZE027868

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007210367.1	0	hypothetical protein PRUPE_ppa001305mg [Prunus persica]
COG	YP_004625437.1	3E-76	alpha,alpha-trehalose-phosphate synthase
Swissprot	tr\|O23617\|TPS5_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
trEMBL	tr\|M5WE38\|M5WE38_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11566.1}
TAIR10	AT4G17770.1	0	trehalose phosphatase/synthase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30534933	30536569	-
GWHAAZE00000008	mRNA	30534933	30536569	-
GWHAAZE00000008	exon	30534933	30535295	-
GWHAAZE00000008	exon	30535376	30536569	-
GWHAAZE00000008	CDS	30535376	30536569	-
GWHAAZE00000008	CDS	30534933	30535295	-

Transcript Sequence
>GWHTAAZE027902 ATGGTTTCGAGGTCTTATTCGAACCTATTTGAGCTTGCTTCCGGTGACTCCCCCACCTTTGGCCGGGCCGGCAAGAAGTTCCCTAGAGTGGCAACTGTCGCCGGAGTACTATCTGAGCTCGACGATGATAATAGCAACAGCATTGGCTCTGATGCACCCTCTTCCGTATCCCAAGAACGGATGATCATAGTGGGAAACCAACTCCCTCTGCGAGCCCACAGGAGATCAGACGGTGACGATCAAGGATGGAACTTTAGTTGGGATGAAGACTCCCTTCTTTTACAACTCAAAGATGGCCTAGGTGAAGATGTAGAAGTTATTTATGTTGGTTCACTTAGAGAAGAGATTGATCCTAGTGAACAAGATGATGTTGCTCAAACTTTGCTCGAAACTTTCAAATGTGTACCGGCTTTTATCCCTCAAGAACTTTTTAGCAAATTCTATCATGGGTTTTGTAAGCAACAACTATGGCCTTTATTTCACTACATGCTTCCTTTATCACCAGAGCTAGGTGGTCGGTTCGACCGATCCTTATGGCAAGCTTATGTGTCAGTTAACAAGATTTTTGCAGATAAAGTGATGGAAGTTATTAGCCCTGATGATGATTTTGTGTGGGTCCATGACTATCATTTGATGGTTTTACCGACGTTTTTGAGGAAGAGGTTCAATCGGGTGAAGCTCGGGTTCTTCCTCCATAGCCCGTTCCCCTCATCGGAGATTTACCGGACTTTGCCCGTTAGAGACGAGCTTCTTCGTGCACTATTAAACTCGGATCTCATTGGATTCCATACTTTTGACTATGCGAGGCACTTTCTTTCTTGTTGTAGTAGAATGCTTGGTCTTTCTTATCAATCGAAACGAGGCTACATTGGGCTAGAGTACTATGGTCGGACTGTAAGCATCAAGATTCTCCCGGTCGGGATCCATATGGGTCAACTTCAAAATGTTTTGGACCTACCTGAGACCGAGTCAAAAGTTGCGAATCTAAGAGATCGGTTTAGGGGTCAAACCATTTTGCTTGGAGTTGATGATATGGACATTTTCAAAGGAATAAGCTTGAAGCTCTTGGCATTTGAACATTTGCTCACCCAACACCCTGACAAACGAGGAAAAGTTGTACTTGTCCAAATTGCCAATCCGGCTAGAGGCCGAGGGAGGGACGTGCAAGAAGTTCAATCAGAAACATCTGCTACTCGGATCGCTTACTATGTTGTCGCCGAGTGTTGCCTTGTGACCGCGGTTCGAGATGGAATGAACCTCATCCCCTATGAATACATCATTTGCCGGCAAGGAACCGATAAGCTCGATGGTACCTTAGGCATTAACAGTGGTGCACCAAAGAAAAGTATGCTTGTAGTTTCCGAGTTCATTGGGTGCTCACCATCACTCAGCGGAGCCATTCGGGTCAATCCGTGGAACGTTGATGCTGTAGCTGAAGCTATGGATTCGGCTTTAATTGTATCCGATGCTGAAAAACAGTTGAGGCACGAGAAACACTATCGGTATGTGAGTACCCATGATGTTGCCTATTGGGCACAGTTTCTTGCAGGATCTTGA

Network for GWHGAAZE027868

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	60	397	3.70E-127
PF00982.22	Glyco_transf_20	398	513	1.70E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	99.146
	SRR3591706	second leaf	46.179
	SRR3591707	mature leaf	49.190
	SRR3591708	Shoot apex	46.250
	SRR3591709	Stem	98.868
	SRR3591710	White floral bud	68.734
	SRR3591711	White flower	18.788
	SRR3591712	Green floral bud	91.596
	SRR3591713	Yellow flower	4.132
SRP173429	SRR8316895	Juvenile bud stage	18.927
	SRR8316896	Juvenile bud stage	33.461
	SRR8316897	Juvenile bud stage	17.667
	SRR8316894	Third green stage	23.774
	SRR8316900	Third green stage	73.704
	SRR8316901	Third green stage	67.042
	SRR8316898	Complete white stage	17.797
	SRR8316899	Complete white stage	103.400
	SRR8316903	Complete white stage	36.731
	SRR8316902	Silver flowering stage	5.417
	SRR8316904	Silver flowering stage	8.217
	SRR8316905	Silver flowering stage	4.040
	SRR8316906	Gold flowering stage	4.457
	SRR8316907	Gold flowering stage	4.609
	SRR8316908	Gold flowering stage	5.800
SRP132670	SRR6706286	Control	70.686
	SRR6706287	Light intensity 50%	83.429
	SRR6706288	Light intensity 20%	94.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.558
	CNS0095593	Slightly white alabastrum(diploid) 2	21.844
	CNS0095594	Slightly white alabastrum(diploid) 3	12.020
	CNS0095595	Whole white alabastrum(diploid) 2	23.339
	CNS0095596	Whole white alabastrum(diploid) 3	14.812
	CNS0095597	Whole white alabastrum(diploid) 4	18.371
	CNS0095598	Silvery flower (diploied) 1	11.853
	CNS0095599	Silvery flower (diploied) 2	13.262
	CNS0095600	Silvery flower (diploied) 3	16.697
	CNS0095601	Golden flower (diploid) 1	7.624
	CNS0095602	Golden flower (diploid) 2	8.238
	CNS0095603	Golden flower (diploid) 3	7.510
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	147.686
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	70.691
	CNS0095610	Silvery flower (tetraploid) 1	8.136
	CNS0095611	Silvery flower (tetraploid) 2	12.278
	CNS0095612	Silvery flower (tetraploid) 3	9.094
	CNS0095613	Golden flower (tetraploid) 1	0.660
	CNS0095614	Golden flower (tetraploid) 2	2.304
	CNS0095615	Golden flower (tetraploid) 3	1.572
CRA001975	CRR073297	Stem 1	64.455
	CRR073298	Stem 2	71.159
	CRR073299	Stem 3	73.603
	CRR073300	Leaf 1	140.148
	CRR073301	Leaf 2	104.329
	CRR073302	Leaf 3	109.440
	CRR073303	Juvenile bud 1	108.708
	CRR073304	Juvenile bud 2	76.361
	CRR073305	Juvenile bud 3	154.303
	CRR073306	Third green 1	11.102
	CRR073307	Third green 2	8.834
	CRR073308	Third green 3	11.636
	CRR073309	Second white 1	2.084
	CRR073310	Second white 2	1.996
	CRR073311	Second white 3	1.357
	CRR073312	Silver flowering 1	0.569
	CRR073313	Silver flowering 2	0.242
	CRR073314	Silver flowering 3	0.356
	CRR073315	Gold flowering 1	30.288
	CRR073316	Gold flowering 2	39.590
	CRR073317	Gold flowering 3	43.435
	CRR073318	Tawny withering 1	44.229
	CRR073319	Tawny withering 2	38.634
	CRR073320	Tawny withering 3	65.257