Detail information of GWHGAAZE027776


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009382653.11.41713E-64PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Musa acuminata subsp. malaccensis]
COGYP_001018009.13E-30ATP-dependent Clp protease-like protein
Swissprottr|Q8LB10|CLPR4_ARATH2E-62ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic (Precursor)
trEMBLtr|A0A067F0M4|A0A067F0M4_CITSI1E-63ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIR10AT4G17040.13E-51CLP protease R subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2763365827635714-
GWHAAZE00000008mRNA2763365827635714-
GWHAAZE00000008exon2763365827633729-
GWHAAZE00000008exon2763387627633989-
GWHAAZE00000008exon2763452927634606-
GWHAAZE00000008exon2763539827635524-
GWHAAZE00000008exon2763570727635714-
GWHAAZE00000008CDS2763570727635714-
GWHAAZE00000008CDS2763539827635524-
GWHAAZE00000008CDS2763452927634606-
GWHAAZE00000008CDS2763387627633989-
GWHAAZE00000008CDS2763365827633729-
Transcript Sequence

Network for GWHGAAZE027776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.24CLP_protease41123.40E-31
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01358clpP, CLPP Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0004252molecular_functionserine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf103.675
SRR3591706second leaf170.894
SRR3591707mature leaf203.170
SRR3591708Shoot apex171.251
SRR3591709Stem65.994
SRR3591710White floral bud147.474
SRR3591711White flower148.815
SRR3591712Green floral bud155.585
SRR3591713Yellow flower212.005
SRP173429 SRR8316895Juvenile bud stage 81.827
SRR8316896Juvenile bud stage 111.584
SRR8316897Juvenile bud stage 51.620
SRR8316894Third green stage 39.245
SRR8316900Third green stage 152.242
SRR8316901Third green stage 133.731
SRR8316898Complete white stage 51.923
SRR8316899Complete white stage 140.849
SRR8316903Complete white stage 72.353
SRR8316902Silver flowering stage65.564
SRR8316904Silver flowering stage70.201
SRR8316905Silver flowering stage42.489
SRR8316906Gold flowering stage 132.837
SRR8316907Gold flowering stage 115.467
SRR8316908Gold flowering stage 150.878
SRP132670SRR6706286Control150.489
SRR6706287Light intensity 50%152.616
SRR6706288Light intensity 20%159.675
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1121.256
CNS0095593Slightly white alabastrum(diploid) 2111.681
CNS0095594Slightly white alabastrum(diploid) 398.999
CNS0095595Whole white alabastrum(diploid) 2111.114
CNS0095596Whole white alabastrum(diploid) 3139.155
CNS0095597Whole white alabastrum(diploid) 4115.940
CNS0095598Silvery flower (diploied) 1129.232
CNS0095599Silvery flower (diploied) 2121.728
CNS0095600Silvery flower (diploied) 3128.750
CNS0095601Golden flower (diploid) 1122.271
CNS0095602Golden flower (diploid) 2123.471
CNS0095603Golden flower (diploid) 3132.713
CNS0095604Slightly white alabastrum(tetraploid) 1122.921
CNS0095605Slightly white alabastrum(tetraploid) 2123.179
CNS0095606Slightly white alabastrum(tetraploid) 3168.966
CNS0095607Whole white alabastrum(tetraploid) 178.228
CNS0095608Whole white alabastrum(tetraploid) 2109.488
CNS0095609Whole white alabastrum(tetraploid) 3176.707
CNS0095610Silvery flower (tetraploid) 1166.719
CNS0095611Silvery flower (tetraploid) 2177.391
CNS0095612Silvery flower (tetraploid) 3182.230
CNS0095613Golden flower (tetraploid) 1194.368
CNS0095614Golden flower (tetraploid) 2187.403
CNS0095615Golden flower (tetraploid) 3185.541
CRA001975CRR073297Stem 1113.082
CRR073298Stem 2111.215
CRR073299Stem 3127.740
CRR073300Leaf 1130.928
CRR073301Leaf 2129.623
CRR073302Leaf 3144.109
CRR073303Juvenile bud 1136.516
CRR073304Juvenile bud 2142.385
CRR073305Juvenile bud 3103.497
CRR073306Third green 1128.855
CRR073307Third green 283.727
CRR073308Third green 387.178
CRR073309Second white 1114.608
CRR073310Second white 2118.833
CRR073311Second white 3104.207
CRR073312Silver flowering 1133.091
CRR073313Silver flowering 2117.734
CRR073314Silver flowering 3112.438
CRR073315Gold flowering 1230.875
CRR073316Gold flowering 2238.741
CRR073317Gold flowering 3190.046
CRR073318Tawny withering 167.539
CRR073319Tawny withering 277.759
CRR073320Tawny withering 373.411