Gene detail

Detail information of GWHGAAZE027693

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039928.1	2.1146E-171	NAC domain protein, IPR003441 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	3E-148	NAC domain-containing protein 7
trEMBL	tr\|A0A061GBJ7\|A0A061GBJ7_THECC	8E-172	NAC domain protein, IPR003441 isoform 1 {ECO:0000313\|EMBL:EOY24429.1}
TAIR10	AT1G12260.1	3E-117	NAC 007

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	25717003	25719824	+
GWHAAZE00000008	mRNA	25717003	25719824	+
GWHAAZE00000008	exon	25717003	25717162	+
GWHAAZE00000008	exon	25717837	25718108	+
GWHAAZE00000008	exon	25719255	25719824	+
GWHAAZE00000008	CDS	25717003	25717162	+
GWHAAZE00000008	CDS	25717837	25718108	+
GWHAAZE00000008	CDS	25719255	25719824	+

Transcript Sequence
>GWHTAAZE027727 ATGAATACTTTTTCACACGTTCCCCCTGGTTTTAGATTTCACCCTACAGATGAAGAACTTGTCGATTACTACCTTAGAAAAAAGGTTGCATCGAAAAGAATCGACCTAGATGTCATTAAAGATGTTGATCTTTACAAAATTGAGCCATGGGATCTTCAAGAACTTTGCAAGCTAGGAACTGAGGATCAAAATGAGTGGTATTTCTTTAGCCATAAAGACAAGAAGTACCCAACAGGAACAAGGACAAATAGGGCTACAAAAGCTGGGTTTTGGAAAGCCACAGGAAGGGATAAGGCTATTTACGTTAAGCATTGTTTGGTTGGGATGAGAAAGACTTTGGTATTTTACAAAGGTCGAGCCCCAAATGGTCAAAAATCAGATTGGATTATGCATGAATATAGACTTGAAACAAATGAAAATGGTGCCCCTCAAGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGCGAATCACGACTGTAAGAAGGATGGATGACCACGATTCGATCTGTTGGTATGATGAACAAGTTTCCTTCATGCCGGATTTTAATTCCCCAAATCGCCCTTATAGCAATCCTTCATATAACAACCATCACTATCCTTGCAAACAAGAGCTTGAGTTACAATACAATAACAACATCCCTCAACATGACTCATTATTCCTCCAACTCCCTCACTTAGAAAGCCCTAAAATGCCCTACTCTTTCGACACAAGCAACAACAATGCCACCAATTTGCATTCGTCTCGAGAGGAACAAATTATTAGTACTCAACAAGAAAATATCAACTCAATTTACGTCAACAACACTGATGACCAAGTAACTGACTGGCGCGTCATGGACAAATTCGTTGCATCTCAACTCAGCCAGGAAGATAGCGCATCCAAAGAGAATATCGCATACGCGAATGCACTAATTGATGAAGACTCGAAGAGGCAAGAAGTCGGTTCGGATTGTGCATCGATGTCCACTTCTAGCTGCCAAATTGATTTGTGGAAGTGA

Network for GWHGAAZE027693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	8	135	7.00E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.902
	SRR3591706	second leaf	1.801
	SRR3591707	mature leaf	0.528
	SRR3591708	Shoot apex	1.875
	SRR3591709	Stem	2.457
	SRR3591710	White floral bud	0.562
	SRR3591711	White flower	0.483
	SRR3591712	Green floral bud	2.197
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.324
	SRR8316896	Juvenile bud stage	1.689
	SRR8316897	Juvenile bud stage	0.594
	SRR8316894	Third green stage	0.500
	SRR8316900	Third green stage	2.880
	SRR8316901	Third green stage	2.418
	SRR8316898	Complete white stage	0.215
	SRR8316899	Complete white stage	0.828
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.124
	SRR8316904	Silver flowering stage	0.018
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.270
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.482
	SRR6706287	Light intensity 50%	0.518
	SRR6706288	Light intensity 20%	0.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.704
	CNS0095593	Slightly white alabastrum(diploid) 2	1.368
	CNS0095594	Slightly white alabastrum(diploid) 3	1.570
	CNS0095595	Whole white alabastrum(diploid) 2	0.734
	CNS0095596	Whole white alabastrum(diploid) 3	0.918
	CNS0095597	Whole white alabastrum(diploid) 4	0.533
	CNS0095598	Silvery flower (diploied) 1	1.153
	CNS0095599	Silvery flower (diploied) 2	0.152
	CNS0095600	Silvery flower (diploied) 3	0.205
	CNS0095601	Golden flower (diploid) 1	0.063
	CNS0095602	Golden flower (diploid) 2	0.291
	CNS0095603	Golden flower (diploid) 3	0.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.463
	CNS0095610	Silvery flower (tetraploid) 1	0.177
	CNS0095611	Silvery flower (tetraploid) 2	0.092
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.129
CRA001975	CRR073297	Stem 1	1.070
	CRR073298	Stem 2	1.338
	CRR073299	Stem 3	1.892
	CRR073300	Leaf 1	0.961
	CRR073301	Leaf 2	0.500
	CRR073302	Leaf 3	1.294
	CRR073303	Juvenile bud 1	0.055
	CRR073304	Juvenile bud 2	0.127
	CRR073305	Juvenile bud 3	0.224
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.044
	CRR073316	Gold flowering 2	0.071
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.923
	CRR073319	Tawny withering 2	0.556
	CRR073320	Tawny withering 3	1.191