Detail information of GWHGAAZE027678


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17622.11.9816E-121unnamed protein product [Coffea canephora]
Swissprottr|Q9SHF3|AGO2_ARATH6E-95Protein argonaute 2
trEMBLtr|A0A068VAJ7|A0A068VAJ7_COFCA7E-122Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIR10AT1G31280.13E-75Argonaute family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2546138425463318+
GWHAAZE00000008mRNA2546138425463318+
GWHAAZE00000008exon2546138425461656+
GWHAAZE00000008exon2546271325463318+
GWHAAZE00000008CDS2546138425461656+
GWHAAZE00000008CDS2546271325463318+
Transcript Sequence

Network for GWHGAAZE027678

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02171.18Piwi3911.70E-08
PF02171.18Piwi922421.10E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.087
SRR3591706second leaf0.155
SRR3591707mature leaf0.240
SRR3591708Shoot apex0.448
SRR3591709Stem0.395
SRR3591710White floral bud0.169
SRR3591711White flower0.782
SRR3591712Green floral bud0.788
SRR3591713Yellow flower0.091
SRP173429 SRR8316895Juvenile bud stage 2.424
SRR8316896Juvenile bud stage 3.170
SRR8316897Juvenile bud stage 1.532
SRR8316894Third green stage 1.529
SRR8316900Third green stage 2.516
SRR8316901Third green stage 2.822
SRR8316898Complete white stage 0.514
SRR8316899Complete white stage 4.046
SRR8316903Complete white stage 0.812
SRR8316902Silver flowering stage0.505
SRR8316904Silver flowering stage1.887
SRR8316905Silver flowering stage0.214
SRR8316906Gold flowering stage 0.915
SRR8316907Gold flowering stage 0.871
SRR8316908Gold flowering stage 1.126
SRP132670SRR6706286Control2.990
SRR6706287Light intensity 50%3.442
SRR6706288Light intensity 20%3.357
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.736
CNS0095593Slightly white alabastrum(diploid) 22.496
CNS0095594Slightly white alabastrum(diploid) 30.626
CNS0095595Whole white alabastrum(diploid) 22.791
CNS0095596Whole white alabastrum(diploid) 31.712
CNS0095597Whole white alabastrum(diploid) 43.307
CNS0095598Silvery flower (diploied) 11.370
CNS0095599Silvery flower (diploied) 22.547
CNS0095600Silvery flower (diploied) 33.325
CNS0095601Golden flower (diploid) 13.120
CNS0095602Golden flower (diploid) 22.200
CNS0095603Golden flower (diploid) 32.245
CNS0095604Slightly white alabastrum(tetraploid) 15.280
CNS0095605Slightly white alabastrum(tetraploid) 24.467
CNS0095606Slightly white alabastrum(tetraploid) 36.764
CNS0095607Whole white alabastrum(tetraploid) 11.821
CNS0095608Whole white alabastrum(tetraploid) 23.608
CNS0095609Whole white alabastrum(tetraploid) 33.623
CNS0095610Silvery flower (tetraploid) 15.266
CNS0095611Silvery flower (tetraploid) 23.512
CNS0095612Silvery flower (tetraploid) 31.713
CNS0095613Golden flower (tetraploid) 13.157
CNS0095614Golden flower (tetraploid) 23.757
CNS0095615Golden flower (tetraploid) 30.912
CRA001975CRR073297Stem 12.704
CRR073298Stem 23.011
CRR073299Stem 30.522
CRR073300Leaf 13.196
CRR073301Leaf 23.432
CRR073302Leaf 30.861
CRR073303Juvenile bud 11.109
CRR073304Juvenile bud 20.098
CRR073305Juvenile bud 31.610
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.121
CRR073309Second white 10.000
CRR073310Second white 20.153
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.465
CRR073316Gold flowering 21.163
CRR073317Gold flowering 30.145
CRR073318Tawny withering 10.464
CRR073319Tawny withering 21.229
CRR073320Tawny withering 30.830