Detail information of GWHGAAZE027631


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADI80347.103-hydroxy-3-methylglutaryl coenzyme A synthase [Panax ginseng]
COGYP_632442.17E-50hydroxymethylglutaryl-CoA synthase
Swissprottr|P54873|HMCS_ARATH0Hydroxymethylglutaryl-CoA synthase
trEMBLtr|F8QQQ9|F8QQQ9_PANGI03-hydroxy-3-methylglutaryl coenzyme A synthase {ECO:0000313|EMBL:ADI80347.1}
TAIR10AT4G11820.20hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2403887424045923+
GWHAAZE00000008mRNA2403887424045923+
GWHAAZE00000008exon2403887424038945+
GWHAAZE00000008exon2404017724040283+
GWHAAZE00000008exon2404130924041441+
GWHAAZE00000008exon2404172024041863+
GWHAAZE00000008exon2404250824042666+
GWHAAZE00000008exon2404312424043197+
GWHAAZE00000008exon2404329624043371+
GWHAAZE00000008exon2404349824043553+
GWHAAZE00000008exon2404367124043758+
GWHAAZE00000008exon2404388924044029+
GWHAAZE00000008exon2404458324044732+
GWHAAZE00000008exon2404568724045923+
GWHAAZE00000008CDS2403887424038945+
GWHAAZE00000008CDS2404017724040283+
GWHAAZE00000008CDS2404130924041441+
GWHAAZE00000008CDS2404172024041863+
GWHAAZE00000008CDS2404250824042666+
GWHAAZE00000008CDS2404312424043197+
GWHAAZE00000008CDS2404329624043371+
GWHAAZE00000008CDS2404349824043553+
GWHAAZE00000008CDS2404367124043758+
GWHAAZE00000008CDS2404388924044029+
GWHAAZE00000008CDS2404458324044732+
GWHAAZE00000008CDS2404568724045923+
Transcript Sequence

Network for GWHGAAZE027631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01154.18HMG_CoA_synt_N51772.00E-81
PF08540.11HMG_CoA_synt_C1784626.80E-107
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01641E2.3.3.10 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Terpenoid backbone biosynthesismap00900
PPAR signaling pathwaymap03320

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0004421molecular_functionhydroxymethylglutaryl-CoA synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.277
SRR3591706second leaf167.858
SRR3591707mature leaf45.591
SRR3591708Shoot apex87.939
SRR3591709Stem61.571
SRR3591710White floral bud146.735
SRR3591711White flower163.090
SRR3591712Green floral bud202.387
SRR3591713Yellow flower162.029
SRP173429 SRR8316895Juvenile bud stage 62.806
SRR8316896Juvenile bud stage 115.445
SRR8316897Juvenile bud stage 65.185
SRR8316894Third green stage 64.975
SRR8316900Third green stage 194.747
SRR8316901Third green stage 197.134
SRR8316898Complete white stage 135.003
SRR8316899Complete white stage 235.649
SRR8316903Complete white stage 178.303
SRR8316902Silver flowering stage358.152
SRR8316904Silver flowering stage472.924
SRR8316905Silver flowering stage225.735
SRR8316906Gold flowering stage 1328.539
SRR8316907Gold flowering stage 1045.190
SRR8316908Gold flowering stage 1798.186
SRP132670SRR6706286Control154.368
SRR6706287Light intensity 50%174.249
SRR6706288Light intensity 20%194.294
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.575
CNS0095593Slightly white alabastrum(diploid) 2107.960
CNS0095594Slightly white alabastrum(diploid) 385.348
CNS0095595Whole white alabastrum(diploid) 293.610
CNS0095596Whole white alabastrum(diploid) 3116.928
CNS0095597Whole white alabastrum(diploid) 484.359
CNS0095598Silvery flower (diploied) 175.368
CNS0095599Silvery flower (diploied) 272.430
CNS0095600Silvery flower (diploied) 3365.107
CNS0095601Golden flower (diploid) 171.764
CNS0095602Golden flower (diploid) 2223.792
CNS0095603Golden flower (diploid) 3212.932
CNS0095604Slightly white alabastrum(tetraploid) 1141.179
CNS0095605Slightly white alabastrum(tetraploid) 2130.616
CNS0095606Slightly white alabastrum(tetraploid) 3163.453
CNS0095607Whole white alabastrum(tetraploid) 190.429
CNS0095608Whole white alabastrum(tetraploid) 287.851
CNS0095609Whole white alabastrum(tetraploid) 3176.091
CNS0095610Silvery flower (tetraploid) 1323.156
CNS0095611Silvery flower (tetraploid) 2398.917
CNS0095612Silvery flower (tetraploid) 31123.653
CNS0095613Golden flower (tetraploid) 1251.238
CNS0095614Golden flower (tetraploid) 2268.323
CNS0095615Golden flower (tetraploid) 3266.242
CRA001975CRR073297Stem 1147.966
CRR073298Stem 2143.165
CRR073299Stem 3128.216
CRR073300Leaf 1251.870
CRR073301Leaf 2250.404
CRR073302Leaf 3291.007
CRR073303Juvenile bud 1249.512
CRR073304Juvenile bud 2213.490
CRR073305Juvenile bud 3270.415
CRR073306Third green 11282.265
CRR073307Third green 2798.197
CRR073308Third green 3887.786
CRR073309Second white 11976.472
CRR073310Second white 21530.705
CRR073311Second white 31598.599
CRR073312Silver flowering 11307.222
CRR073313Silver flowering 21385.624
CRR073314Silver flowering 31137.292
CRR073315Gold flowering 160.471
CRR073316Gold flowering 275.336
CRR073317Gold flowering 375.856
CRR073318Tawny withering 183.385
CRR073319Tawny withering 2109.409
CRR073320Tawny withering 359.676