Gene detail

Detail information of GWHGAAZE027620

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072169.1	1.3777E-152	PREDICTED: F-box protein PP2-A12 [Sesamum indicum]
Swissprot	tr\|Q9LN77\|P2A12_ARATH	9E-131	F-box protein PP2-A12
trEMBL	tr\|A0A068UMP7\|A0A068UMP7_COFCA	2E-152	Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313\|EMBL:CDP09805.1}
TAIR10	AT1G12710.1	6E-105	phloem protein 2-A12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23815830	23818045	+
GWHAAZE00000008	mRNA	23815830	23818045	+
GWHAAZE00000008	exon	23815830	23816147	+
GWHAAZE00000008	exon	23817117	23817235	+
GWHAAZE00000008	exon	23817625	23818045	+
GWHAAZE00000008	CDS	23815830	23816147	+
GWHAAZE00000008	CDS	23817117	23817235	+
GWHAAZE00000008	CDS	23817625	23818045	+

Transcript Sequence
>GWHTAAZE027654 ATGGGTTCCGGTTTTTCTTTTCTCTTCACAGAAACTTTCCCGGCACCGGCGCCTGCGAGGCCGAGTCTTGGGGACTTGCCGGAGAGCTGTGTGGCCTCTGTATTAGAGTACCTTGACCCGCCGGAGATCTGCAAACTCGCTGTTCTGAATAAGGCTTTTAACGGCGCTTCTTCGGCAGATTTTGTTTGGGAATCGAAATTGCCGCCGAATTATAATTCTTTGATCGAAAGAGTGTTTGGTAAATTTGAAGAAAAATTGTGTAAGAAGGATATTTATCAAAAGCTCTGTAAAAACAATTCTTTTGATGGAGGCAACAAGAAAGTATGGCTGGATAAAAGTTCGGGAAAGATTTTTTTGTCAATATCTTCAAATGGGTTGTCGATTACCGGCATTGAGGATCGGAGATACTGGAGCCGAATACCAACCGATGAATCCAGATTCAGCTCAGTCGCGTATCTCCAGCAAATCTGGTGGTTTGAAGTTGATGGTGAAATCGAATTCCCATTCCCGGCTGGAACCTATAGCATTTTCTTCAGGCTGCAGCTAGGCCGCCCATCTAAGAGATTTGGCCGCCGCATCTGCAACTCTGAACGCGTCCATGGTTGGGACAAAAAGCCTGTCCGCTTCCAGCTCTCCACCTCCAATGGCCAATCCTCAGTTTCAGAGTGTAATTTGAACGAACCTGGTAAATGGATTCATCACCATGTCGGCAATTTCGTGGTCCAGGATTCAAATGTGTGTACAAAAATAAAATTCTCGATGTTGCAGATCGATTGCACGCATACCAAAGGTGGTGTATGCGTCGATTCAGTTGTGATATACCCCAGTGAGTTTAAAGATAGGTTGAAGAATTTTTGA

Network for GWHGAAZE027620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	119	275	3.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.389
	SRR3591706	second leaf	7.284
	SRR3591707	mature leaf	11.703
	SRR3591708	Shoot apex	17.597
	SRR3591709	Stem	27.042
	SRR3591710	White floral bud	34.070
	SRR3591711	White flower	434.341
	SRR3591712	Green floral bud	6.199
	SRR3591713	Yellow flower	554.560
SRP173429	SRR8316895	Juvenile bud stage	15.592
	SRR8316896	Juvenile bud stage	11.748
	SRR8316897	Juvenile bud stage	18.523
	SRR8316894	Third green stage	2.852
	SRR8316900	Third green stage	9.887
	SRR8316901	Third green stage	12.568
	SRR8316898	Complete white stage	20.090
	SRR8316899	Complete white stage	19.388
	SRR8316903	Complete white stage	21.885
	SRR8316902	Silver flowering stage	220.725
	SRR8316904	Silver flowering stage	202.821
	SRR8316905	Silver flowering stage	32.387
	SRR8316906	Gold flowering stage	135.366
	SRR8316907	Gold flowering stage	246.459
	SRR8316908	Gold flowering stage	259.318
SRP132670	SRR6706286	Control	9.907
	SRR6706287	Light intensity 50%	11.412
	SRR6706288	Light intensity 20%	13.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.417
	CNS0095593	Slightly white alabastrum(diploid) 2	5.642
	CNS0095594	Slightly white alabastrum(diploid) 3	9.350
	CNS0095595	Whole white alabastrum(diploid) 2	4.657
	CNS0095596	Whole white alabastrum(diploid) 3	4.379
	CNS0095597	Whole white alabastrum(diploid) 4	6.333
	CNS0095598	Silvery flower (diploied) 1	77.566
	CNS0095599	Silvery flower (diploied) 2	42.374
	CNS0095600	Silvery flower (diploied) 3	168.251
	CNS0095601	Golden flower (diploid) 1	55.063
	CNS0095602	Golden flower (diploid) 2	219.710
	CNS0095603	Golden flower (diploid) 3	211.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.468
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.018
	CNS0095610	Silvery flower (tetraploid) 1	348.374
	CNS0095611	Silvery flower (tetraploid) 2	138.355
	CNS0095612	Silvery flower (tetraploid) 3	179.168
	CNS0095613	Golden flower (tetraploid) 1	207.031
	CNS0095614	Golden flower (tetraploid) 2	228.470
	CNS0095615	Golden flower (tetraploid) 3	158.381
CRA001975	CRR073297	Stem 1	15.930
	CRR073298	Stem 2	11.249
	CRR073299	Stem 3	13.842
	CRR073300	Leaf 1	9.270
	CRR073301	Leaf 2	8.949
	CRR073302	Leaf 3	9.266
	CRR073303	Juvenile bud 1	8.743
	CRR073304	Juvenile bud 2	6.871
	CRR073305	Juvenile bud 3	9.611
	CRR073306	Third green 1	528.256
	CRR073307	Third green 2	430.871
	CRR073308	Third green 3	434.252
	CRR073309	Second white 1	1159.470
	CRR073310	Second white 2	925.704
	CRR073311	Second white 3	838.374
	CRR073312	Silver flowering 1	987.486
	CRR073313	Silver flowering 2	1094.316
	CRR073314	Silver flowering 3	870.654
	CRR073315	Gold flowering 1	22.844
	CRR073316	Gold flowering 2	28.115
	CRR073317	Gold flowering 3	7.960
	CRR073318	Tawny withering 1	15.144
	CRR073319	Tawny withering 2	8.859
	CRR073320	Tawny withering 3	14.353