Gene detail

Detail information of GWHGAAZE027589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGY31282.1	8.3325E-102	glutathione peroxidase 2 [Panax ginseng]
COG	YP_007511424.1	1E-58	glutathione peroxidase
Swissprot	tr\|O48646\|GPX6_ARATH	2E-97	Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial (Precursor)
trEMBL	tr\|U5NNJ1\|U5NNJ1_PANGI	3E-102	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}
TAIR10	AT4G11600.1	1E-77	glutathione peroxidase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23219568	23222991	-
GWHAAZE00000008	mRNA	23219568	23222991	-
GWHAAZE00000008	exon	23222941	23222991	-
GWHAAZE00000008	exon	23221645	23221721	-
GWHAAZE00000008	exon	23220879	23220940	-
GWHAAZE00000008	exon	23220590	23220708	-
GWHAAZE00000008	exon	23219712	23219879	-
GWHAAZE00000008	exon	23219568	23219622	-
GWHAAZE00000008	CDS	23222941	23222991	-
GWHAAZE00000008	CDS	23221645	23221721	-
GWHAAZE00000008	CDS	23220879	23220940	-
GWHAAZE00000008	CDS	23220590	23220708	-
GWHAAZE00000008	CDS	23219712	23219879	-
GWHAAZE00000008	CDS	23219590	23219622	-
GWHAAZE00000008	three_prime_UTR	23219568	23219589	-

Transcript Sequence
>GWHTAAZE027623 ATGGCCGGTCAAAGTAGCAAGGTCGATACAGTCCACGATTTCACCGTCAAGGATGCTAGCGGGAACGAAGTGGATCTTGGCAAGTACAAGGGAAAAGTGTTGCTGATTGTCAATGTGGCATCACAATGTGGCCTGACCAATTCAAATTACACTGAGTTAGCAACTCTCTACCAGCACTATAAAGATCAAGGTTTTGAGATTCTGGCATTTCCATGCAACCAATTTGGTGGACAGGAGCCAGGGACTAATGAAGAGATTAAAGAATTTGCTTGTACACGCTTTAAGGCCGAATATCCCATATTTGATAAGGTCGAGGTGAATGGAGCAAAAGCAGCTCCACTGTATAAGTACTTGAAATCGAGCAAAGGTGGATTATTAGGGGATGATATAAAGTGGAACTTCAGTAAATTCCTGGTTGATAAAGATGGCAAGGTCGTGGATCGCTATGCTCCCACCACCTCTCCTCTCAGTATCGAGAAGGATATTAAGAAACTACTGGGAATTGCTTAAGAGATGGGAGTATATGGCCTTC

Network for GWHGAAZE027589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00255.20	GSHPx	11	119	3.90E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.265
	SRR3591706	second leaf	103.241
	SRR3591707	mature leaf	111.527
	SRR3591708	Shoot apex	66.258
	SRR3591709	Stem	90.012
	SRR3591710	White floral bud	67.562
	SRR3591711	White flower	147.833
	SRR3591712	Green floral bud	52.560
	SRR3591713	Yellow flower	100.097
SRP173429	SRR8316895	Juvenile bud stage	102.722
	SRR8316896	Juvenile bud stage	142.583
	SRR8316897	Juvenile bud stage	96.967
	SRR8316894	Third green stage	58.831
	SRR8316900	Third green stage	119.360
	SRR8316901	Third green stage	156.198
	SRR8316898	Complete white stage	78.531
	SRR8316899	Complete white stage	107.074
	SRR8316903	Complete white stage	102.301
	SRR8316902	Silver flowering stage	149.848
	SRR8316904	Silver flowering stage	167.384
	SRR8316905	Silver flowering stage	98.991
	SRR8316906	Gold flowering stage	200.262
	SRR8316907	Gold flowering stage	209.023
	SRR8316908	Gold flowering stage	202.447
SRP132670	SRR6706286	Control	95.003
	SRR6706287	Light intensity 50%	78.880
	SRR6706288	Light intensity 20%	69.735
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	129.914
	CNS0095593	Slightly white alabastrum(diploid) 2	90.886
	CNS0095594	Slightly white alabastrum(diploid) 3	124.476
	CNS0095595	Whole white alabastrum(diploid) 2	84.673
	CNS0095596	Whole white alabastrum(diploid) 3	79.018
	CNS0095597	Whole white alabastrum(diploid) 4	73.270
	CNS0095598	Silvery flower (diploied) 1	224.458
	CNS0095599	Silvery flower (diploied) 2	210.047
	CNS0095600	Silvery flower (diploied) 3	232.572
	CNS0095601	Golden flower (diploid) 1	259.032
	CNS0095602	Golden flower (diploid) 2	252.211
	CNS0095603	Golden flower (diploid) 3	243.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	93.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.394
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.830
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.901
	CNS0095610	Silvery flower (tetraploid) 1	348.971
	CNS0095611	Silvery flower (tetraploid) 2	358.219
	CNS0095612	Silvery flower (tetraploid) 3	143.123
	CNS0095613	Golden flower (tetraploid) 1	256.593
	CNS0095614	Golden flower (tetraploid) 2	294.413
	CNS0095615	Golden flower (tetraploid) 3	93.385
CRA001975	CRR073297	Stem 1	70.248
	CRR073298	Stem 2	57.774
	CRR073299	Stem 3	77.899
	CRR073300	Leaf 1	43.568
	CRR073301	Leaf 2	46.103
	CRR073302	Leaf 3	61.699
	CRR073303	Juvenile bud 1	56.571
	CRR073304	Juvenile bud 2	47.025
	CRR073305	Juvenile bud 3	44.417
	CRR073306	Third green 1	55.166
	CRR073307	Third green 2	52.050
	CRR073308	Third green 3	42.984
	CRR073309	Second white 1	90.427
	CRR073310	Second white 2	82.837
	CRR073311	Second white 3	68.530
	CRR073312	Silver flowering 1	66.085
	CRR073313	Silver flowering 2	92.352
	CRR073314	Silver flowering 3	79.052
	CRR073315	Gold flowering 1	123.598
	CRR073316	Gold flowering 2	111.053
	CRR073317	Gold flowering 3	62.730
	CRR073318	Tawny withering 1	47.314
	CRR073319	Tawny withering 2	56.686
	CRR073320	Tawny withering 3	42.943