Detail information of GWHGAAZE027542


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273444.10PREDICTED: DNA repair helicase XPB1 [Vitis vinifera]
COGYP_003514811.16E-81type III restriction protein res subunit
Swissprottr|Q38861|XPB1_ARATH0DNA repair helicase XPB1
trEMBLtr|F6HUL9|F6HUL9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58185.1}
TAIR10AT5G41370.10homolog of xeroderma pigmentosum complementation group B 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2182111721835597-
GWHAAZE00000008mRNA2182111721835597-
GWHAAZE00000008exon2183558821835597-
GWHAAZE00000008exon2183540621835449-
GWHAAZE00000008exon2183524721835316-
GWHAAZE00000008exon2183495921835130-
GWHAAZE00000008exon2183412821834350-
GWHAAZE00000008exon2183398221834038-
GWHAAZE00000008exon2183340521833548-
GWHAAZE00000008exon2183156921831649-
GWHAAZE00000008exon2183131521831402-
GWHAAZE00000008exon2182757721827914-
GWHAAZE00000008exon2182671721826792-
GWHAAZE00000008exon2182642521826618-
GWHAAZE00000008exon2182508321825246-
GWHAAZE00000008exon2182458621824658-
GWHAAZE00000008exon2182355521823668-
GWHAAZE00000008exon2182272821822808-
GWHAAZE00000008exon2182199121822050-
GWHAAZE00000008exon2182134721821430-
GWHAAZE00000008exon2182111721821257-
GWHAAZE00000008CDS2183558821835597-
GWHAAZE00000008CDS2183540621835449-
GWHAAZE00000008CDS2183524721835316-
GWHAAZE00000008CDS2183495921835130-
GWHAAZE00000008CDS2183412821834350-
GWHAAZE00000008CDS2183398221834038-
GWHAAZE00000008CDS2183340521833548-
GWHAAZE00000008CDS2183156921831649-
GWHAAZE00000008CDS2183131521831402-
GWHAAZE00000008CDS2182757721827914-
GWHAAZE00000008CDS2182671721826792-
GWHAAZE00000008CDS2182642521826618-
GWHAAZE00000008CDS2182508321825246-
GWHAAZE00000008CDS2182458621824658-
GWHAAZE00000008CDS2182355521823668-
GWHAAZE00000008CDS2182272821822808-
GWHAAZE00000008CDS2182199121822050-
GWHAAZE00000008CDS2182134721821430-
GWHAAZE00000008CDS2182111721821257-
Transcript Sequence

Network for GWHGAAZE027542

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13625.7Helicase_C_3661897.50E-34
PF04851.16ResIII2814371.60E-13
PF16203.6ERCC3_RAD25_C4637116.20E-115
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10843ERCC3, XPB Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006289biological_processnucleotide-excision repair
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity
GO:0003678molecular_functionDNA helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.982
SRR3591706second leaf12.292
SRR3591707mature leaf7.596
SRR3591708Shoot apex11.913
SRR3591709Stem18.592
SRR3591710White floral bud22.104
SRR3591711White flower23.448
SRR3591712Green floral bud26.961
SRR3591713Yellow flower27.866
SRP173429 SRR8316895Juvenile bud stage 18.018
SRR8316896Juvenile bud stage 27.668
SRR8316897Juvenile bud stage 15.043
SRR8316894Third green stage 12.590
SRR8316900Third green stage 40.914
SRR8316901Third green stage 36.725
SRR8316898Complete white stage 18.513
SRR8316899Complete white stage 33.011
SRR8316903Complete white stage 28.111
SRR8316902Silver flowering stage15.423
SRR8316904Silver flowering stage23.020
SRR8316905Silver flowering stage11.525
SRR8316906Gold flowering stage 39.452
SRR8316907Gold flowering stage 33.942
SRR8316908Gold flowering stage 38.770
SRP132670SRR6706286Control27.093
SRR6706287Light intensity 50%32.851
SRR6706288Light intensity 20%35.498
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.002
CNS0095593Slightly white alabastrum(diploid) 213.054
CNS0095594Slightly white alabastrum(diploid) 315.238
CNS0095595Whole white alabastrum(diploid) 215.088
CNS0095596Whole white alabastrum(diploid) 317.377
CNS0095597Whole white alabastrum(diploid) 415.260
CNS0095598Silvery flower (diploied) 19.453
CNS0095599Silvery flower (diploied) 213.162
CNS0095600Silvery flower (diploied) 325.265
CNS0095601Golden flower (diploid) 111.157
CNS0095602Golden flower (diploid) 219.285
CNS0095603Golden flower (diploid) 318.895
CNS0095604Slightly white alabastrum(tetraploid) 123.613
CNS0095605Slightly white alabastrum(tetraploid) 219.239
CNS0095606Slightly white alabastrum(tetraploid) 323.415
CNS0095607Whole white alabastrum(tetraploid) 119.448
CNS0095608Whole white alabastrum(tetraploid) 224.102
CNS0095609Whole white alabastrum(tetraploid) 339.773
CNS0095610Silvery flower (tetraploid) 130.837
CNS0095611Silvery flower (tetraploid) 229.961
CNS0095612Silvery flower (tetraploid) 331.251
CNS0095613Golden flower (tetraploid) 118.314
CNS0095614Golden flower (tetraploid) 225.083
CNS0095615Golden flower (tetraploid) 324.328
CRA001975CRR073297Stem 116.070
CRR073298Stem 212.841
CRR073299Stem 311.691
CRR073300Leaf 118.750
CRR073301Leaf 216.285
CRR073302Leaf 316.379
CRR073303Juvenile bud 118.910
CRR073304Juvenile bud 223.944
CRR073305Juvenile bud 315.211
CRR073306Third green 113.568
CRR073307Third green 210.747
CRR073308Third green 310.116
CRR073309Second white 19.148
CRR073310Second white 213.639
CRR073311Second white 313.924
CRR073312Silver flowering 16.552
CRR073313Silver flowering 28.228
CRR073314Silver flowering 39.113
CRR073315Gold flowering 12.816
CRR073316Gold flowering 24.546
CRR073317Gold flowering 32.007
CRR073318Tawny withering 14.907
CRR073319Tawny withering 25.317
CRR073320Tawny withering 36.799