Detail information of GWHGAAZE027420


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266992.10PREDICTED: probable low-specificity L-threonine aldolase 1 [Vitis vinifera]
COGYP_005443407.14E-105putative threonine aldolase
Swissprottr|Q8RXU4|THA1_ARATH0Probable low-specificity L-threonine aldolase 1
trEMBLtr|F6H619|F6H619_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47658.1}
TAIR10AT1G08630.46E-144threonine aldolase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1960379319607437-
GWHAAZE00000008mRNA1960379319607437-
GWHAAZE00000008exon1960379319603918-
GWHAAZE00000008exon1960425019604308-
GWHAAZE00000008exon1960490419605036-
GWHAAZE00000008exon1960513219605203-
GWHAAZE00000008exon1960558819605638-
GWHAAZE00000008exon1960607619606187-
GWHAAZE00000008exon1960699519607437-
GWHAAZE00000008CDS1960699519607437-
GWHAAZE00000008CDS1960607619606187-
GWHAAZE00000008CDS1960558819605638-
GWHAAZE00000008CDS1960513219605203-
GWHAAZE00000008CDS1960490419605036-
GWHAAZE00000008CDS1960425019604308-
GWHAAZE00000008CDS1960379319603918-
Transcript Sequence

Network for GWHGAAZE027420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01212.22Beta_elim_lyase72943.20E-92
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01620ltaE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016829molecular_functionlyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.792
SRR3591706second leaf61.899
SRR3591707mature leaf61.815
SRR3591708Shoot apex59.887
SRR3591709Stem144.186
SRR3591710White floral bud273.004
SRR3591711White flower305.513
SRR3591712Green floral bud106.944
SRR3591713Yellow flower368.075
SRP173429 SRR8316895Juvenile bud stage 55.458
SRR8316896Juvenile bud stage 88.196
SRR8316897Juvenile bud stage 43.655
SRR8316894Third green stage 32.154
SRR8316900Third green stage 97.421
SRR8316901Third green stage 107.308
SRR8316898Complete white stage 95.360
SRR8316899Complete white stage 209.402
SRR8316903Complete white stage 167.837
SRR8316902Silver flowering stage47.323
SRR8316904Silver flowering stage61.615
SRR8316905Silver flowering stage31.407
SRR8316906Gold flowering stage 111.143
SRR8316907Gold flowering stage 105.681
SRR8316908Gold flowering stage 171.168
SRP132670SRR6706286Control124.084
SRR6706287Light intensity 50%137.330
SRR6706288Light intensity 20%136.407
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.792
CNS0095593Slightly white alabastrum(diploid) 276.287
CNS0095594Slightly white alabastrum(diploid) 367.711
CNS0095595Whole white alabastrum(diploid) 266.675
CNS0095596Whole white alabastrum(diploid) 360.111
CNS0095597Whole white alabastrum(diploid) 460.557
CNS0095598Silvery flower (diploied) 1120.911
CNS0095599Silvery flower (diploied) 2128.012
CNS0095600Silvery flower (diploied) 3131.758
CNS0095601Golden flower (diploid) 1103.816
CNS0095602Golden flower (diploid) 2115.507
CNS0095603Golden flower (diploid) 3110.889
CNS0095604Slightly white alabastrum(tetraploid) 196.839
CNS0095605Slightly white alabastrum(tetraploid) 280.838
CNS0095606Slightly white alabastrum(tetraploid) 3119.802
CNS0095607Whole white alabastrum(tetraploid) 171.904
CNS0095608Whole white alabastrum(tetraploid) 254.608
CNS0095609Whole white alabastrum(tetraploid) 3108.068
CNS0095610Silvery flower (tetraploid) 1181.511
CNS0095611Silvery flower (tetraploid) 2170.137
CNS0095612Silvery flower (tetraploid) 3180.969
CNS0095613Golden flower (tetraploid) 190.435
CNS0095614Golden flower (tetraploid) 2164.720
CNS0095615Golden flower (tetraploid) 368.585
CRA001975CRR073297Stem 174.080
CRR073298Stem 270.560
CRR073299Stem 356.883
CRR073300Leaf 1112.709
CRR073301Leaf 2101.975
CRR073302Leaf 385.558
CRR073303Juvenile bud 1102.299
CRR073304Juvenile bud 2206.852
CRR073305Juvenile bud 393.689
CRR073306Third green 186.525
CRR073307Third green 278.578
CRR073308Third green 385.438
CRR073309Second white 153.100
CRR073310Second white 255.789
CRR073311Second white 340.203
CRR073312Silver flowering 130.151
CRR073313Silver flowering 237.300
CRR073314Silver flowering 342.247
CRR073315Gold flowering 137.551
CRR073316Gold flowering 249.604
CRR073317Gold flowering 341.411
CRR073318Tawny withering 158.622
CRR073319Tawny withering 259.255
CRR073320Tawny withering 342.651