Gene detail

Detail information of GWHGAAZE027384

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529954.1	9.23449E-89	NAC domain-containing protein 21/22, putative [Ricinus communis]
Swissprot	tr\|Q84TE6\|NAC22_ARATH	5E-78	NAC domain-containing protein 21/22
trEMBL	tr\|B9SVD5\|B9SVD5_RICCO	3E-89	NAC domain-containing protein 21/22, putative {ECO:0000313\|EMBL:EEF32431.1}
TAIR10	AT1G56010.2	1E-63	NAC domain containing protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18642149	18645540	-
GWHAAZE00000008	mRNA	18642149	18645540	-
GWHAAZE00000008	exon	18645360	18645540	-
GWHAAZE00000008	exon	18643662	18643882	-
GWHAAZE00000008	exon	18642514	18642676	-
GWHAAZE00000008	exon	18642149	18642267	-
GWHAAZE00000008	CDS	18645360	18645540	-
GWHAAZE00000008	CDS	18643662	18643882	-
GWHAAZE00000008	CDS	18642514	18642676	-
GWHAAZE00000008	CDS	18642149	18642267	-

Transcript Sequence
>GWHTAAZE027418 ATGAGCAGCAATAATAATCTAGGGATGGTGGAGGCAAAATTGCCACCCGGGTTTAGGTTCCATCCAAGAGACATAGAACTAATATGTGATTACTTGATGAAGAAGATTTGTCGCTGCGAGCAGGAGCCTCTTCTTTTGATCGAAGTTGACCTCAACAAGTCCGAACCTTGGGACATTCCTGAAAGGGCATGCGTGGGAGGGAGAGAATGGTACTTTTACAGCCAGCGTGACCGGAAATACGCGACTGGTTGCAGAACAAATAGGGCTACAGTTTCGGGGTATTGGAAGGCGACTGGGAAAGACAGACCAGTTATACATGGTAGAGATAATAGGCTTGTTGGCATGAGAAAAACGTTGGTGTTCTACAAAGGGAGGGCACCTAAAGGCAAGAAAACCGATTGGGAAGATTGGGTATTATGTAGGATGTTCTACAAAAGCAGAGAAGTTGAAGAAGTTGCATCATCCAAACAAGGCATAGGAAGCAGCAGCTGTGATGAGTCAACAGGCTTTTCATCTCTTCCACCACTGATGGATTCTTATATCACATTTGAACAAAGTCAGACCAAGGCTGTTGCTGTCATAAATCATCTTAACAAGATGGATACCAATACTACTCCTAACGCCAAGGAATTGTCGTCGAGCTTTGGAGGAGGAATTAGTTCAGAGAGCCTTTTATCTGATGTG

Network for GWHGAAZE027384

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	15	138	1.30E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.425
	SRR3591706	second leaf	0.115
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.300
	SRR3591709	Stem	2.494
	SRR3591710	White floral bud	2.141
	SRR3591711	White flower	0.352
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.516
SRP173429	SRR8316895	Juvenile bud stage	1.054
	SRR8316896	Juvenile bud stage	1.133
	SRR8316897	Juvenile bud stage	0.050
	SRR8316894	Third green stage	0.079
	SRR8316900	Third green stage	0.330
	SRR8316901	Third green stage	0.514
	SRR8316898	Complete white stage	1.060
	SRR8316899	Complete white stage	2.242
	SRR8316903	Complete white stage	1.923
	SRR8316902	Silver flowering stage	0.490
	SRR8316904	Silver flowering stage	1.080
	SRR8316905	Silver flowering stage	0.253
	SRR8316906	Gold flowering stage	0.259
	SRR8316907	Gold flowering stage	0.510
	SRR8316908	Gold flowering stage	0.467
SRP132670	SRR6706286	Control	1.624
	SRR6706287	Light intensity 50%	1.488
	SRR6706288	Light intensity 20%	1.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.687
	CNS0095593	Slightly white alabastrum(diploid) 2	1.965
	CNS0095594	Slightly white alabastrum(diploid) 3	0.883
	CNS0095595	Whole white alabastrum(diploid) 2	1.471
	CNS0095596	Whole white alabastrum(diploid) 3	1.128
	CNS0095597	Whole white alabastrum(diploid) 4	0.754
	CNS0095598	Silvery flower (diploied) 1	2.366
	CNS0095599	Silvery flower (diploied) 2	3.476
	CNS0095600	Silvery flower (diploied) 3	0.996
	CNS0095601	Golden flower (diploid) 1	2.375
	CNS0095602	Golden flower (diploid) 2	2.375
	CNS0095603	Golden flower (diploid) 3	2.326
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.471
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.454
	CNS0095611	Silvery flower (tetraploid) 2	0.272
	CNS0095612	Silvery flower (tetraploid) 3	0.300
	CNS0095613	Golden flower (tetraploid) 1	0.088
	CNS0095614	Golden flower (tetraploid) 2	0.119
	CNS0095615	Golden flower (tetraploid) 3	0.102
CRA001975	CRR073297	Stem 1	0.524
	CRR073298	Stem 2	0.129
	CRR073299	Stem 3	0.167
	CRR073300	Leaf 1	0.644
	CRR073301	Leaf 2	0.312
	CRR073302	Leaf 3	0.192
	CRR073303	Juvenile bud 1	0.802
	CRR073304	Juvenile bud 2	0.532
	CRR073305	Juvenile bud 3	1.209
	CRR073306	Third green 1	0.268
	CRR073307	Third green 2	0.515
	CRR073308	Third green 3	0.411
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.117
	CRR073311	Second white 3	0.252
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.312
	CRR073314	Silver flowering 3	0.079
	CRR073315	Gold flowering 1	0.311
	CRR073316	Gold flowering 2	0.386
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	3.772
	CRR073319	Tawny withering 2	6.642
	CRR073320	Tawny withering 3	2.068