Gene detail

Detail information of GWHGAAZE027351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267870.2	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Vitis vinifera]
COG	YP_004775215.1	1E-54	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGR3\|Y4265_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|A0A068UZ75\|A0A068UZ75_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13676.1}
TAIR10	AT5G56040.2	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18093585	18097203	+
GWHAAZE00000008	mRNA	18093585	18097203	+
GWHAAZE00000008	exon	18093585	18096405	+
GWHAAZE00000008	exon	18096752	18097203	+
GWHAAZE00000008	CDS	18093585	18096405	+
GWHAAZE00000008	CDS	18096752	18097203	+

Transcript Sequence
>GWHTAAZE027385 ATGTTGCCTGTATCCTTAAGGAATCCCTTACTTTCTCCCTTTATCTTCTCCTTCACTTTGTTTTTATCAATAAACTCTTTTTTTCTCCGCTCTTCTTGTTACTCTATTGATGTACAGTCCCAAGCCCTTTTAACATGGAAGAACACCTTAACCAGCTCCACAGATGCACTAAAATCATGGAATTCTTCAGGCCAAAGTCCCTGCACCTGGTTTGGAATACACTGCAACTCAAATGGGGATGTACTGAAGATAAGCTTAAAGTCGGTGGATTTGCAAGGACCATTGCCTTCAAATTTTCAGCCTCTCAAGTCCTTGAACACTCTTATCATCTCTTCAACCAATCTCACTGGCCCAATTCCAACACAATTCGGAGATTATCACGAGCTAACTGTCATAGATATCGGTGGCAATTCATTAACAGGCGAAATCCCGGTGCAGATTTGCAAGCTGAATAAACTTCAGACATTGTCTCTCAGTACTAATTTTCTTGAAGGTGAAATTCCTTCTAACATTGGAAATCTCTCGAATCTCGTGTATCTTATGCTCTTTGACAATCAGCTCAGTGGCGTAATTCCAAAAGGTATTGGAAATTTGAAGAATCTTGAAATTTTCAGAGCTGGTGGGAATCAAAATCTCACCGGTGAGTTGCCATGGGAGATTGGGAACTGCAGTAACTTGGTCTTGTTAGGCCTAGCAGAAACAAGCATTTCTGGGATTATCCCTTCATCATTTGGGATGCTAAAAAGGATTCAAACTATAGCCATTTATACATCTCTACTGTCCGGTCCGATCCCAGAAGAGTTTGCCAACTGCAGTGAGTTGAAGAATCTTTACTTGTATCAGAATTCAATCTCCGGTCCAATTCCAAGGGGGATTGGCGAGCTAAAAAAGCTTGAAAGCCTGCTGTTATGGCAGAACAACATTGTTGGCACCATTTCCAATGAGCTCGGAAGCTGCAGCGAGCTTACGGTGGTGGACTTGTCGGAGAATCTTCTGACAGGTAGCATACCAGCCAATTTTGGAGGCCTTTCGAAGCTTCAAGAGCTTCAGTTGAGTGTCAATCGGTTATCAGGTACTTTACCTTCTGAAATCTCGAATTGCACGGCTCTTATTCATTTGGAAGTGGACAACAACGATATTTCAGGGGAGATTCCTGTTTTCATAGGCAAATTGAAGAGCATGACTCTGTTTTTCGCGTGGCAGAATAGGATATCGGGTAATATCCCAGAATCTCTATCCGAGTGTGAGAATCTTCAAGCTCTTGATCTTTCTTACAATCAACTCTCCGGTCCAATACCGGAGCCTATTTTTGCATTGAAAAATCTCACCAAACTGTTGCTGCTTTCCAATAATTTATCGGGCTTTATACCGCCTGACATTGGAAACTGCACGAATCTGTATAGGTTCCGAGTGAACGACAATAGGCTGGCGGGTACTATTCCATTGGAAATTGGAAATTTAAACAGTTTGAATTTCTTGGACCTGAGCAAGAACGAACTCGAAGGAGGAATTCCTCCCTCAATATCTGGATGTGTAAACCTTGAGTTTCTTGATTTGCATTCGAATAGACTCACTGGTTCCGCGCCTGAAATTCTTCCGAAAAGCCTACAGTTTGTTGACATTTCAGACAACAAGCTTATAGGTTCTTTGAGTCCAAGTGTGGGTTTATTAACTGAATTAACCAAACTTAATCTAGGAAAGAATCAACTTTCTGGTAGGATTCCAGGAGAGATCCTATCTTGTAGTAAGCTGCAATTGTTAGATCTTGGAAGCAATGGTTTCTCTGGTGACATACCCAAAGAATTGGGTCAAATTCCGTCACTTGAAATCTCTCTTAATCTTAGTTATAACCAATTTACAGGTAAGATCCCAGTCGAGATCTCGGGTCTTAGCAAACTAGGAATCCTTGACCTCTCCCATAACAAGCTTACAGGGAAATTACACATTCTAGCAACCCTTCAAAACCTTGTCTCCCTCAACGTATCGTTTAATAACTTCTCTGGTGACGTGCCCGATACCCCATTTTTCCGTAAACTACCTACGGAAGACCTTGCCGGAAACCAAGCTCTGGACATATCCGGCCGAGCAGTAAGTCCGGCCGACAAAATGGGACCTGCCAGGGGTGCCAAAACCACGATGAAACTAGCAATGTCAATCCTTATCAGTATTAGTGTAGTACTAGTACTACTTGCAATCTATGTGTTAGTTAGGACCCGAATGGCCAACCGTGGGTCACTCGAATGTGACACTTGGGAACTAACATTCTATCAAAAGATGGAATTTTTGGTCGATGACATAGTCCAAGAGCTAACATCATTGAATGTGATTGGGACCGGAAGCTCTGGAGTTGTGTACCGGGTCACAACTCCTAATGGGGACACACTAGCAGTCAAGAAGATGTGGTCACTAGAAGAGTCGGAAGCATTCAGCTCTGAAATTAGGACATTGGGTTTGATTAGGCACCGAAATATTGTGCGTCTCTTGGGTTGGGGCTCGAACCGGAGTTTGAAGCTGCTGTTCTATGATTACCTCCCTAATGGGAGCTTGAGTTCACTCCTTCATGGTTCTGGTAAGAGAGGGGCAGAATGGGAAACTAGATACGATGTTGTCCTTGGTGTGGCACACGCACTAGCCTACTTACACCATGACTGCATGCCCCCTATCTTGCACGGGGATGTGAAAGGCATGAACGTGCTTTTGGGTCCTCGCCTCGAACCTTATCTTGCTGACTTTGGGCTGGCTAGGCTTGCTGATGATGACAATCTGTCAAAACAAAACCAAAGACCTCAACTAGCTGGATCTTATGGATATATGGCTCCTGAACATGGTTTGGGGCAACCCATCACTGAGAAGAGTGATGTTTATAGTTTTGGGGTGATCCTTTTAGAGGTCTTGACAGGAAGGCATCCGTTAGACCCGACTCTGCCAGGGGGTGGACACTTGGTTCAGTGGGCTCGGGAGCACTTGCAGAGGAAGCTCAACCCGGTTGATATTCTTGATCCCAAAATCAGAGGGAGGGCTGACCCGCAAATGCACGAAATGCTCCAAACACTAGCGGTTTCGTTCCTGTGCATCAGCACACGAGCTAGTGATCGTCCAATAATGAAGGATGTTGTAGCAATGCTCAAGGAAATTCGACCTGCAGAGCCTGTAAGGTCAGATACCGATCTAAAGGGAGGTTTATCCGCCATTCCAACATCCCCTCCTTCTCGAAAGATGGTTTGCCAAGGCTCCTCTAATTGTTCCCTCGCATTCTCCGATGACTCAGTGTAA

Network for GWHGAAZE027351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	39	76	2.10E-11
PF13855.7	LRR_8	104	161	8.40E-07
PF13855.7	LRR_8	321	380	4.30E-08
PF00069.26	Pkinase	772	972	1.10E-34

Protein Sequence

>GWHPAAZE027369
MLPVSLRNPLLSPFIFSFTLFLSINSFFLRSSCYSIDVQSQALLTWKNTLTSSTDALKSWNSSGQSPCTWFGIHCNSNGDVLKISLKSVDLQGPLPSNFQPLKSLNTLIISSTNLTGPIPTQFGDYHELTVIDIGGNSLTGEIPVQICKLNKLQTLSLSTNFLEGEIPSNIGNLSNLVYLMLFDNQLSGVIPKGIGNLKNLEIFRAGGNQNLTGELPWEIGNCSNLVLLGLAETSISGIIPSSFGMLKRIQTIAIYTSLLSGPIPEEFANCSELKNLYLYQNSISGPIPRGIGELKKLESLLLWQNNIVGTISNELGSCSELTVVDLSENLLTGSIPANFGGLSKLQELQLSVNRLSGTLPSEISNCTALIHLEVDNNDISGEIPVFIGKLKSMTLFFAWQNRISGNIPESLSECENLQALDLSYNQLSGPIPEPIFALKNLTKLLLLSNNLSGFIPPDIGNCTNLYRFRVNDNRLAGTIPLEIGNLNSLNFLDLSKNELEGGIPPSISGCVNLEFLDLHSNRLTGSAPEILPKSLQFVDISDNKLIGSLSPSVGLLTELTKLNLGKNQLSGRIPGEILSCSKLQLLDLGSNGFSGDIPKELGQIPSLEISLNLSYNQFTGKIPVEISGLSKLGILDLSHNKLTGKLHILATLQNLVSLNVSFNNFSGDVPDTPFFRKLPTEDLAGNQALDISGRAVSPADKMGPARGAKTTMKLAMSILISISVVLVLLAIYVLVRTRMANRGSLECDTWELTFYQKMEFLVDDIVQELTSLNVIGTGSSGVVYRVTTPNGDTLAVKKMWSLEESEAFSSEIRTLGLIRHRNIVRLLGWGSNRSLKLLFYDYLPNGSLSSLLHGSGKRGAEWETRYDVVLGVAHALAYLHHDCMPPILHGDVKGMNVLLGPRLEPYLADFGLARLADDDNLSKQNQRPQLAGSYGYMAPEHGLGQPITEKSDVYSFGVILLEVLTGRHPLDPTLPGGGHLVQWAREHLQRKLNPVDILDPKIRGRADPQMHEMLQTLAVSFLCISTRASDRPIMKDVVAMLKEIRPAEPVRSDTDLKGGLSAIPTSPPSRKMVCQGSSNCSLAFSDDSV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.548
	SRR3591706	second leaf	2.784
	SRR3591707	mature leaf	0.949
	SRR3591708	Shoot apex	1.024
	SRR3591709	Stem	0.333
	SRR3591710	White floral bud	8.315
	SRR3591711	White flower	0.510
	SRR3591712	Green floral bud	4.207
	SRR3591713	Yellow flower	0.326
SRP173429	SRR8316895	Juvenile bud stage	0.638
	SRR8316896	Juvenile bud stage	1.080
	SRR8316897	Juvenile bud stage	0.456
	SRR8316894	Third green stage	1.889
	SRR8316900	Third green stage	5.765
	SRR8316901	Third green stage	5.921
	SRR8316898	Complete white stage	5.091
	SRR8316899	Complete white stage	4.154
	SRR8316903	Complete white stage	6.381
	SRR8316902	Silver flowering stage	2.386
	SRR8316904	Silver flowering stage	3.521
	SRR8316905	Silver flowering stage	1.755
	SRR8316906	Gold flowering stage	4.450
	SRR8316907	Gold flowering stage	5.705
	SRR8316908	Gold flowering stage	4.122
SRP132670	SRR6706286	Control	3.425
	SRR6706287	Light intensity 50%	4.553
	SRR6706288	Light intensity 20%	4.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.476
	CNS0095593	Slightly white alabastrum(diploid) 2	2.628
	CNS0095594	Slightly white alabastrum(diploid) 3	1.265
	CNS0095595	Whole white alabastrum(diploid) 2	2.026
	CNS0095596	Whole white alabastrum(diploid) 3	2.411
	CNS0095597	Whole white alabastrum(diploid) 4	2.209
	CNS0095598	Silvery flower (diploied) 1	0.621
	CNS0095599	Silvery flower (diploied) 2	0.984
	CNS0095600	Silvery flower (diploied) 3	1.999
	CNS0095601	Golden flower (diploid) 1	0.241
	CNS0095602	Golden flower (diploid) 2	0.269
	CNS0095603	Golden flower (diploid) 3	0.317
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.379
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.610
	CNS0095610	Silvery flower (tetraploid) 1	0.897
	CNS0095611	Silvery flower (tetraploid) 2	1.038
	CNS0095612	Silvery flower (tetraploid) 3	27.145
	CNS0095613	Golden flower (tetraploid) 1	0.729
	CNS0095614	Golden flower (tetraploid) 2	0.312
	CNS0095615	Golden flower (tetraploid) 3	0.544
CRA001975	CRR073297	Stem 1	3.502
	CRR073298	Stem 2	4.844
	CRR073299	Stem 3	2.467
	CRR073300	Leaf 1	9.289
	CRR073301	Leaf 2	8.553
	CRR073302	Leaf 3	6.083
	CRR073303	Juvenile bud 1	5.549
	CRR073304	Juvenile bud 2	5.684
	CRR073305	Juvenile bud 3	5.914
	CRR073306	Third green 1	19.715
	CRR073307	Third green 2	16.666
	CRR073308	Third green 3	15.512
	CRR073309	Second white 1	18.023
	CRR073310	Second white 2	20.599
	CRR073311	Second white 3	19.759
	CRR073312	Silver flowering 1	13.362
	CRR073313	Silver flowering 2	10.172
	CRR073314	Silver flowering 3	6.225
	CRR073315	Gold flowering 1	0.001
	CRR073316	Gold flowering 2	0.210
	CRR073317	Gold flowering 3	0.168
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000