Detail information of GWHGAAZE027327


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010088460.10Meiotic recombination protein SPO11-1 [Morus notabilis]
COGYP_008432319.11E-47DNA topoisomerase VI subunit A
Swissprottr|Q9M4A2|SPO11_ARATH6E-175Meiotic recombination protein SPO11-1
trEMBLtr|W9QQJ3|W9QQJ3_9ROSA0Meiotic recombination protein SPO11-1 {ECO:0000313|EMBL:EXB36075.1}
TAIR10AT3G13170.11E-131Spo11/DNA topoisomerase VI, subunit A protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1779183117795820-
GWHAAZE00000008mRNA1779183117795820-
GWHAAZE00000008exon1779543017795820-
GWHAAZE00000008exon1779514717795248-
GWHAAZE00000008exon1779468517794761-
GWHAAZE00000008exon1779444317794459-
GWHAAZE00000008exon1779367817793747-
GWHAAZE00000008exon1779356417793600-
GWHAAZE00000008exon1779323317793280-
GWHAAZE00000008exon1779308417793142-
GWHAAZE00000008exon1779299117793022-
GWHAAZE00000008exon1779277817792883-
GWHAAZE00000008exon1779222317792343-
GWHAAZE00000008exon1779206317792126-
GWHAAZE00000008exon1779183117791957-
GWHAAZE00000008five_prime_UTR1779553317795820-
GWHAAZE00000008CDS1779543017795532-
GWHAAZE00000008CDS1779514717795248-
GWHAAZE00000008CDS1779468517794761-
GWHAAZE00000008CDS1779444317794459-
GWHAAZE00000008CDS1779367817793747-
GWHAAZE00000008CDS1779356417793600-
GWHAAZE00000008CDS1779323317793280-
GWHAAZE00000008CDS1779308417793142-
GWHAAZE00000008CDS1779299117793022-
GWHAAZE00000008CDS1779277817792883-
GWHAAZE00000008CDS1779222317792343-
GWHAAZE00000008CDS1779206317792126-
GWHAAZE00000008CDS1779183117791957-
Transcript Sequence

Network for GWHGAAZE027327

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04406.15TP6A_N32941.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10878SPO11 Meiosis - yeast map04113

Gene Ontology

GO term OntologyName
GO:0006259biological_processDNA metabolic process
GO:0000737biological_processDNA catabolic process, endonucleolytic
GO:0005694cellular_componentchromosome
GO:0003677molecular_functionDNA binding
GO:0016889molecular_functionendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0003824molecular_functioncatalytic activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.355
SRR3591706second leaf9.365
SRR3591707mature leaf5.534
SRR3591708Shoot apex13.363
SRR3591709Stem5.494
SRR3591710White floral bud1.971
SRR3591711White flower1.581
SRR3591712Green floral bud2.238
SRR3591713Yellow flower0.494
SRP173429 SRR8316895Juvenile bud stage 10.294
SRR8316896Juvenile bud stage 12.885
SRR8316897Juvenile bud stage 6.949
SRR8316894Third green stage 5.537
SRR8316900Third green stage 11.311
SRR8316901Third green stage 10.636
SRR8316898Complete white stage 9.779
SRR8316899Complete white stage 10.160
SRR8316903Complete white stage 12.700
SRR8316902Silver flowering stage5.927
SRR8316904Silver flowering stage7.346
SRR8316905Silver flowering stage3.312
SRR8316906Gold flowering stage 8.733
SRR8316907Gold flowering stage 8.781
SRR8316908Gold flowering stage 10.490
SRP132670SRR6706286Control6.096
SRR6706287Light intensity 50%7.189
SRR6706288Light intensity 20%7.605
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.118
CNS0095593Slightly white alabastrum(diploid) 212.711
CNS0095594Slightly white alabastrum(diploid) 310.472
CNS0095595Whole white alabastrum(diploid) 210.319
CNS0095596Whole white alabastrum(diploid) 38.551
CNS0095597Whole white alabastrum(diploid) 410.189
CNS0095598Silvery flower (diploied) 110.727
CNS0095599Silvery flower (diploied) 213.481
CNS0095600Silvery flower (diploied) 34.321
CNS0095601Golden flower (diploid) 114.727
CNS0095602Golden flower (diploid) 24.921
CNS0095603Golden flower (diploid) 35.752
CNS0095604Slightly white alabastrum(tetraploid) 16.080
CNS0095605Slightly white alabastrum(tetraploid) 24.865
CNS0095606Slightly white alabastrum(tetraploid) 35.846
CNS0095607Whole white alabastrum(tetraploid) 15.287
CNS0095608Whole white alabastrum(tetraploid) 23.846
CNS0095609Whole white alabastrum(tetraploid) 33.938
CNS0095610Silvery flower (tetraploid) 11.321
CNS0095611Silvery flower (tetraploid) 21.315
CNS0095612Silvery flower (tetraploid) 31.916
CNS0095613Golden flower (tetraploid) 10.551
CNS0095614Golden flower (tetraploid) 21.130
CNS0095615Golden flower (tetraploid) 30.205
CRA001975CRR073297Stem 117.946
CRR073298Stem 214.173
CRR073299Stem 310.062
CRR073300Leaf 114.412
CRR073301Leaf 217.142
CRR073302Leaf 312.723
CRR073303Juvenile bud 17.579
CRR073304Juvenile bud 26.295
CRR073305Juvenile bud 35.719
CRR073306Third green 111.930
CRR073307Third green 29.592
CRR073308Third green 310.845
CRR073309Second white 18.996
CRR073310Second white 213.758
CRR073311Second white 37.971
CRR073312Silver flowering 15.655
CRR073313Silver flowering 24.223
CRR073314Silver flowering 32.299
CRR073315Gold flowering 111.493
CRR073316Gold flowering 212.807
CRR073317Gold flowering 37.355
CRR073318Tawny withering 123.010
CRR073319Tawny withering 226.605
CRR073320Tawny withering 320.772