Detail information of GWHGAAZE027289


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGO32051.10GDP-L-galactose phosphorylase [Actinidia rufa]
COGYP_314743.10.000000003hypothetical protein Tbd_0985
Swissprottr|Q8RWE8|GGAP1_ARATH0GDP-L-galactose phosphorylase 1
trEMBLtr|V9NES9|V9NES9_9ERIC0GDP-L-galactose phosphorylase {ECO:0000313|EMBL:AGO32051.1}
TAIR10AT4G26850.10mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1722383917225902+
GWHAAZE00000008mRNA1722383917225902+
GWHAAZE00000008exon1722383917223959+
GWHAAZE00000008exon1722407817224199+
GWHAAZE00000008exon1722431317224372+
GWHAAZE00000008exon1722450017224742+
GWHAAZE00000008exon1722484917225034+
GWHAAZE00000008exon1722517417225422+
GWHAAZE00000008exon1722553717225902+
GWHAAZE00000008CDS1722383917223959+
GWHAAZE00000008CDS1722407817224199+
GWHAAZE00000008CDS1722431317224372+
GWHAAZE00000008CDS1722450017224742+
GWHAAZE00000008CDS1722484917225034+
GWHAAZE00000008CDS1722517417225422+
GWHAAZE00000008CDS1722553717225902+
Transcript Sequence

Network for GWHGAAZE027289

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14190VTC2_5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.486
SRR3591706second leaf193.757
SRR3591707mature leaf885.741
SRR3591708Shoot apex102.895
SRR3591709Stem203.706
SRR3591710White floral bud131.788
SRR3591711White flower232.892
SRR3591712Green floral bud111.281
SRR3591713Yellow flower225.058
SRP173429 SRR8316895Juvenile bud stage 109.351
SRR8316896Juvenile bud stage 110.497
SRR8316897Juvenile bud stage 49.466
SRR8316894Third green stage 50.363
SRR8316900Third green stage 104.787
SRR8316901Third green stage 91.835
SRR8316898Complete white stage 64.206
SRR8316899Complete white stage 221.966
SRR8316903Complete white stage 95.861
SRR8316902Silver flowering stage59.670
SRR8316904Silver flowering stage75.894
SRR8316905Silver flowering stage41.867
SRR8316906Gold flowering stage 100.190
SRR8316907Gold flowering stage 140.667
SRR8316908Gold flowering stage 106.345
SRP132670SRR6706286Control142.288
SRR6706287Light intensity 50%150.942
SRR6706288Light intensity 20%163.075
CNP0000432CNS0095592Slightly white alabastrum(diploid) 195.263
CNS0095593Slightly white alabastrum(diploid) 292.252
CNS0095594Slightly white alabastrum(diploid) 393.509
CNS0095595Whole white alabastrum(diploid) 269.447
CNS0095596Whole white alabastrum(diploid) 356.289
CNS0095597Whole white alabastrum(diploid) 466.988
CNS0095598Silvery flower (diploied) 1185.709
CNS0095599Silvery flower (diploied) 2122.601
CNS0095600Silvery flower (diploied) 3192.663
CNS0095601Golden flower (diploid) 1107.001
CNS0095602Golden flower (diploid) 2173.666
CNS0095603Golden flower (diploid) 3162.279
CNS0095604Slightly white alabastrum(tetraploid) 174.176
CNS0095605Slightly white alabastrum(tetraploid) 259.136
CNS0095606Slightly white alabastrum(tetraploid) 3158.849
CNS0095607Whole white alabastrum(tetraploid) 168.357
CNS0095608Whole white alabastrum(tetraploid) 232.597
CNS0095609Whole white alabastrum(tetraploid) 367.952
CNS0095610Silvery flower (tetraploid) 1142.986
CNS0095611Silvery flower (tetraploid) 2125.096
CNS0095612Silvery flower (tetraploid) 3140.875
CNS0095613Golden flower (tetraploid) 166.596
CNS0095614Golden flower (tetraploid) 2109.717
CNS0095615Golden flower (tetraploid) 3203.864
CRA001975CRR073297Stem 1167.026
CRR073298Stem 2116.583
CRR073299Stem 3163.420
CRR073300Leaf 189.719
CRR073301Leaf 293.291
CRR073302Leaf 380.466
CRR073303Juvenile bud 174.946
CRR073304Juvenile bud 2100.842
CRR073305Juvenile bud 398.837
CRR073306Third green 1109.502
CRR073307Third green 295.240
CRR073308Third green 3102.910
CRR073309Second white 152.919
CRR073310Second white 255.280
CRR073311Second white 364.667
CRR073312Silver flowering 1107.110
CRR073313Silver flowering 295.843
CRR073314Silver flowering 3126.428
CRR073315Gold flowering 1381.128
CRR073316Gold flowering 2379.808
CRR073317Gold flowering 3305.340
CRR073318Tawny withering 1126.681
CRR073319Tawny withering 2135.536
CRR073320Tawny withering 3156.522