Gene detail

Detail information of GWHGAAZE027197

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004488357.1	7.837E-166	PREDICTED: probable galacturonosyltransferase 10-like [Cicer arietinum]
COG	YP_002770215.1	0.0000003	hypothetical protein BBR47_07340
Swissprot	tr\|Q9SKT6\|GAUTA_ARATH	7E-152	Probable galacturonosyltransferase 10
trEMBL	tr\|A0A068V1T1\|A0A068V1T1_COFCA	5E-166	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14710.1}
TAIR10	AT2G20810.1	1E-123	galacturonosyltransferase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16060020	16060883	-
GWHAAZE00000008	mRNA	16060020	16060883	-
GWHAAZE00000008	exon	16060475	16060883	-
GWHAAZE00000008	exon	16060020	16060399	-
GWHAAZE00000008	CDS	16060475	16060883	-
GWHAAZE00000008	CDS	16060020	16060399	-

Transcript Sequence
>GWHTAAZE027231 ATGGCTTTGAACTCCAAAGATCCCAATCAGGTTGTCTTCCACCTTGTGACCGATGAAATAAACTTCGCGCCAATGAAAGCCTGGTTTTCTACGGATCGTTTTCGTGGTGTGACAATCGAGGTTCAAAAGTTTGAAGACTTTAGTTGGCTCAATGCTTCTTATGTTCCCGTCCTCAAGCAGCTCCGAGATTCCGACACTCAAACATACTACTTCTCAGGTAGTAATGACGATGGTAAAACGCCAATCAAGTATCGTAACCCTAAATACCTCTCGATGCTTAACCATCTCAGGTTCTACATTCCCGACATTTTTCCTAAACTTGAGAAGGTAGTATTTCTTGATGATGATGTGGTGGTTCAAAAGGATCTGTCCCCACTCTTCACCGTTGATTTAAATGGAAATGTAAATGCGCATTTTGATCCAGATGCGTGTGGTTGGGCATTTGGGATGAACGTTTTTGATTTGGTAGAGTGGAGAAAAAAGAACGTGACCGGCATCTACCACTACTGGCAGGAGAAAAACATTGACCGGACATTGTGGAAGCTCGGGACTTTACCACCTGGACTCTTGACCTTTTACGGGTTGACAGAGCCATTGGATCCCAGGTGGCATGTTTTAGGTTTAGGTTACACAAACGTTGATCCAGAGTTGATAAAGAACGGAGCTGTACTACATTTTAATGGCAACTCAAAACCGTGGTTGAAGATTGGGATGGAGAAATACAAGCCAATGTGGGATAAGTACGTCGACTATTCGCATCCTATGTTGCAACGATGCAATTTCCATTGA

Network for GWHGAAZE027197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	27	236	2.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.082
	SRR3591706	second leaf	1.548
	SRR3591707	mature leaf	0.564
	SRR3591708	Shoot apex	0.617
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.911
	SRR3591711	White flower	0.432
	SRR3591712	Green floral bud	4.557
	SRR3591713	Yellow flower	0.202
SRP173429	SRR8316895	Juvenile bud stage	1.663
	SRR8316896	Juvenile bud stage	5.142
	SRR8316897	Juvenile bud stage	1.652
	SRR8316894	Third green stage	1.797
	SRR8316900	Third green stage	3.714
	SRR8316901	Third green stage	6.646
	SRR8316898	Complete white stage	0.584
	SRR8316899	Complete white stage	6.602
	SRR8316903	Complete white stage	1.252
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.231
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.452
	SRR8316907	Gold flowering stage	0.266
	SRR8316908	Gold flowering stage	0.283
SRP132670	SRR6706286	Control	2.775
	SRR6706287	Light intensity 50%	3.648
	SRR6706288	Light intensity 20%	3.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.512
	CNS0095593	Slightly white alabastrum(diploid) 2	6.084
	CNS0095594	Slightly white alabastrum(diploid) 3	9.609
	CNS0095595	Whole white alabastrum(diploid) 2	1.509
	CNS0095596	Whole white alabastrum(diploid) 3	3.325
	CNS0095597	Whole white alabastrum(diploid) 4	3.102
	CNS0095598	Silvery flower (diploied) 1	2.810
	CNS0095599	Silvery flower (diploied) 2	1.004
	CNS0095600	Silvery flower (diploied) 3	0.465
	CNS0095601	Golden flower (diploid) 1	1.361
	CNS0095602	Golden flower (diploid) 2	0.673
	CNS0095603	Golden flower (diploid) 3	0.830
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.715
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.496
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.655
	CNS0095610	Silvery flower (tetraploid) 1	0.418
	CNS0095611	Silvery flower (tetraploid) 2	0.161
	CNS0095612	Silvery flower (tetraploid) 3	0.248
	CNS0095613	Golden flower (tetraploid) 1	0.115
	CNS0095614	Golden flower (tetraploid) 2	0.401
	CNS0095615	Golden flower (tetraploid) 3	0.207
CRA001975	CRR073297	Stem 1	2.472
	CRR073298	Stem 2	3.329
	CRR073299	Stem 3	1.394
	CRR073300	Leaf 1	5.234
	CRR073301	Leaf 2	3.201
	CRR073302	Leaf 3	4.511
	CRR073303	Juvenile bud 1	2.915
	CRR073304	Juvenile bud 2	4.470
	CRR073305	Juvenile bud 3	1.756
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.174
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.664
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.231
	CRR073313	Silver flowering 2	0.146
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.525
	CRR073316	Gold flowering 2	0.522
	CRR073317	Gold flowering 3	1.839
	CRR073318	Tawny withering 1	1.021
	CRR073319	Tawny withering 2	0.745
	CRR073320	Tawny withering 3	0.000