Gene detail

Detail information of GWHGAAZE027181

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009343573.1	0	PREDICTED: protochlorophyllide reductase, chloroplastic [Pyrus x bretschneideri]
COG	YP_007155133.1	4E-148	light-dependent protochlorophyllide reductase
Swissprot	tr\|Q9SDT1\|POR_DAUCA	0	Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBL	tr\|A0A067G6B6\|A0A067G6B6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO74130.1}
TAIR10	AT5G54190.1	0	protochlorophyllide oxidoreductase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15833815	15835508	-
GWHAAZE00000008	mRNA	15833815	15835508	-
GWHAAZE00000008	exon	15833815	15833970	-
GWHAAZE00000008	exon	15834059	15834417	-
GWHAAZE00000008	exon	15834614	15835133	-
GWHAAZE00000008	exon	15835262	15835360	-
GWHAAZE00000008	exon	15835452	15835508	-
GWHAAZE00000008	CDS	15835452	15835508	-
GWHAAZE00000008	CDS	15835262	15835360	-
GWHAAZE00000008	CDS	15834614	15835133	-
GWHAAZE00000008	CDS	15834059	15834417	-
GWHAAZE00000008	CDS	15833815	15833970	-

Transcript Sequence
>GWHTAAZE027215 ATGGCTCTACATGCTGCTCCCTTCCTTCCCTCTGCTTTCTCCTCCATCCACAAAGAGGGTAAGAGCAGTACATCTTTGAAGGACTCCACTCTCTTTGGAATTTCATTATCAGATAATCTTAGACCTGAATTCACCAATTCCGCATTCAGAAGCAAGAGAGAATTCAGGACCGGAAGAATTCAAGCGGTAGCTACTACAACACCGGCAGTTAACAAGTCATCACCAGACGGGAAGAAGACCTTGAGAAAGGGAACCGTAATCGTAACCGGAGCCTCCTCTGGACTAGGTCTAGCCACAGCCAAGTCTCTGGCCGAAACGGGCAAATGGCACGTACTCATGGCCTGCAGGGACTTCCTAAAGGCAGAAAGGGCTGCCAAGGCAGCTGGCATGCCCAAGGAGAATTACACTGTTATGCATTTAGACCTCGCTTCACTTGACAGCGTTAGACAGTTTGTAGAAAACTTCAGGCGGTTGGGTCAACCGCTCGATGTATTGGTTTGCAATGCAGCTGTGTACTTGCCTACTGCTAAGGAGCCTACTTTTACAGCTGATGGCTTTGAACTCAGTGTTGGGACTAACCATCTTGGGCATTTCCTCCTTTCGAGATTGCTGGTCGAAGACTTGAAGCAGTCTGATTACCCATCGAAGCGACTCATTATTGTGGGTTCAATCACAGGGAACACCAACACCTTAGCTGGGAATGTACCTCCAAAGGCCAACCTTGGGGACATGAGGGGTCTAGTGGGGGGTTTGAATGGGCTCAACAGCTCAGCCATGATTGACGGTGGAGAATTCGATGGTGCTAAAGCATACAAGGACAGCAAGGTATGCAACATGCTCACCATGCAAGAGTTTCACCGCCGCTTCCATGAGGATACTGGTATCACATTTGCTTCCCTTTACCCGGGTTGCATCGCCACAACTGGCTTGTTTAGGGAGCACATCCCCTTGTTTAGAATCCTTTTCCCTCCATTCCAGAAGTACATCACGAAGGGCTTTGTATCTGAGGAAGAATCTGGGAATCGACTTGCACAGGTTGTGAGTGATCCGAGCTTGACAAAGTCAGGAGTATACTGGAGCTGGAACAAGGACTCGGCTTCATTTGAGAACCAATTGTCTCAAGAAGCCAGTGATGTAGACAAGGCTCGTAAGGTGTGGGAAGTCAGTGAGAAACTTGTTGGCCTGGCTTGA

Network for GWHGAAZE027181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	85	228	2.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00218	por	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016630	molecular_function	protochlorophyllide reductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	387.247
	SRR3591706	second leaf	922.838
	SRR3591707	mature leaf	177.553
	SRR3591708	Shoot apex	621.084
	SRR3591709	Stem	119.691
	SRR3591710	White floral bud	23.861
	SRR3591711	White flower	30.735
	SRR3591712	Green floral bud	9.069
	SRR3591713	Yellow flower	3.776
SRP173429	SRR8316895	Juvenile bud stage	21.395
	SRR8316896	Juvenile bud stage	10.328
	SRR8316897	Juvenile bud stage	39.804
	SRR8316894	Third green stage	4.830
	SRR8316900	Third green stage	3.854
	SRR8316901	Third green stage	4.094
	SRR8316898	Complete white stage	0.577
	SRR8316899	Complete white stage	4.705
	SRR8316903	Complete white stage	8.304
	SRR8316902	Silver flowering stage	1.292
	SRR8316904	Silver flowering stage	1.322
	SRR8316905	Silver flowering stage	0.266
	SRR8316906	Gold flowering stage	1.560
	SRR8316907	Gold flowering stage	1.175
	SRR8316908	Gold flowering stage	9.587
SRP132670	SRR6706286	Control	2.048
	SRR6706287	Light intensity 50%	1.658
	SRR6706288	Light intensity 20%	1.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.514
	CNS0095593	Slightly white alabastrum(diploid) 2	6.618
	CNS0095594	Slightly white alabastrum(diploid) 3	5.919
	CNS0095595	Whole white alabastrum(diploid) 2	5.589
	CNS0095596	Whole white alabastrum(diploid) 3	1.713
	CNS0095597	Whole white alabastrum(diploid) 4	3.537
	CNS0095598	Silvery flower (diploied) 1	71.303
	CNS0095599	Silvery flower (diploied) 2	65.444
	CNS0095600	Silvery flower (diploied) 3	12.823
	CNS0095601	Golden flower (diploid) 1	45.507
	CNS0095602	Golden flower (diploid) 2	24.377
	CNS0095603	Golden flower (diploid) 3	24.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.796
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.116
	CNS0095610	Silvery flower (tetraploid) 1	5.673
	CNS0095611	Silvery flower (tetraploid) 2	17.970
	CNS0095612	Silvery flower (tetraploid) 3	11.717
	CNS0095613	Golden flower (tetraploid) 1	2.652
	CNS0095614	Golden flower (tetraploid) 2	7.594
	CNS0095615	Golden flower (tetraploid) 3	2.697
CRA001975	CRR073297	Stem 1	27.121
	CRR073298	Stem 2	14.861
	CRR073299	Stem 3	29.411
	CRR073300	Leaf 1	2.542
	CRR073301	Leaf 2	2.670
	CRR073302	Leaf 3	2.172
	CRR073303	Juvenile bud 1	0.944
	CRR073304	Juvenile bud 2	0.395
	CRR073305	Juvenile bud 3	0.827
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	0.175
	CRR073308	Third green 3	0.297
	CRR073309	Second white 1	0.167
	CRR073310	Second white 2	0.070
	CRR073311	Second white 3	0.045
	CRR073312	Silver flowering 1	0.272
	CRR073313	Silver flowering 2	0.349
	CRR073314	Silver flowering 3	0.559
	CRR073315	Gold flowering 1	28.686
	CRR073316	Gold flowering 2	25.060
	CRR073317	Gold flowering 3	29.812
	CRR073318	Tawny withering 1	37.272
	CRR073319	Tawny withering 2	33.006
	CRR073320	Tawny withering 3	58.087