Detail information of GWHGAAZE027176


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05900.10unnamed protein product [Coffea canephora]
COGYP_184270.12E-35MMR1/HSR1 family GTPase
Swissprottr|Q9M8Z5|NSN1_ARATH2E-59Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBLtr|A0A068UBG4|A0A068UBG4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP05900.1}
TAIR10AT1G52980.10GTP-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1575997715766162-
GWHAAZE00000008mRNA1575997715766162-
GWHAAZE00000008exon1576567515766162-
GWHAAZE00000008exon1576515315765286-
GWHAAZE00000008exon1576443115764560-
GWHAAZE00000008exon1576407615764233-
GWHAAZE00000008exon1576331415763415-
GWHAAZE00000008exon1576310515763213-
GWHAAZE00000008exon1576183915761966-
GWHAAZE00000008exon1576147915761619-
GWHAAZE00000008exon1576099115761091-
GWHAAZE00000008exon1576058715760644-
GWHAAZE00000008exon1575997715760279-
GWHAAZE00000008five_prime_UTR1576591015766162-
GWHAAZE00000008CDS1576567515765909-
GWHAAZE00000008CDS1576515315765286-
GWHAAZE00000008CDS1576443115764560-
GWHAAZE00000008CDS1576407615764233-
GWHAAZE00000008CDS1576331415763415-
GWHAAZE00000008CDS1576310515763213-
GWHAAZE00000008CDS1576183915761966-
GWHAAZE00000008CDS1576147915761619-
GWHAAZE00000008CDS1576099115761091-
GWHAAZE00000008CDS1576058715760644-
GWHAAZE00000008CDS1575997715760279-
Transcript Sequence

Network for GWHGAAZE027176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08153.13NGP1NT431671.60E-46
PF01926.24MMR_HSR13113711.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14537NUG2, GNL2 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf60.107
SRR3591706second leaf32.290
SRR3591707mature leaf35.545
SRR3591708Shoot apex87.069
SRR3591709Stem47.529
SRR3591710White floral bud34.683
SRR3591711White flower47.207
SRR3591712Green floral bud54.375
SRR3591713Yellow flower23.637
SRP173429 SRR8316895Juvenile bud stage 29.685
SRR8316896Juvenile bud stage 38.196
SRR8316897Juvenile bud stage 18.306
SRR8316894Third green stage 16.229
SRR8316900Third green stage 47.984
SRR8316901Third green stage 42.668
SRR8316898Complete white stage 14.269
SRR8316899Complete white stage 53.239
SRR8316903Complete white stage 18.877
SRR8316902Silver flowering stage12.243
SRR8316904Silver flowering stage16.275
SRR8316905Silver flowering stage8.664
SRR8316906Gold flowering stage 26.984
SRR8316907Gold flowering stage 28.312
SRR8316908Gold flowering stage 29.941
SRP132670SRR6706286Control41.380
SRR6706287Light intensity 50%42.565
SRR6706288Light intensity 20%49.388
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.694
CNS0095593Slightly white alabastrum(diploid) 233.215
CNS0095594Slightly white alabastrum(diploid) 328.210
CNS0095595Whole white alabastrum(diploid) 226.114
CNS0095596Whole white alabastrum(diploid) 328.860
CNS0095597Whole white alabastrum(diploid) 424.886
CNS0095598Silvery flower (diploied) 134.906
CNS0095599Silvery flower (diploied) 229.373
CNS0095600Silvery flower (diploied) 330.349
CNS0095601Golden flower (diploid) 135.680
CNS0095602Golden flower (diploid) 233.020
CNS0095603Golden flower (diploid) 334.213
CNS0095604Slightly white alabastrum(tetraploid) 134.248
CNS0095605Slightly white alabastrum(tetraploid) 231.983
CNS0095606Slightly white alabastrum(tetraploid) 367.954
CNS0095607Whole white alabastrum(tetraploid) 119.835
CNS0095608Whole white alabastrum(tetraploid) 218.625
CNS0095609Whole white alabastrum(tetraploid) 342.364
CNS0095610Silvery flower (tetraploid) 131.601
CNS0095611Silvery flower (tetraploid) 231.501
CNS0095612Silvery flower (tetraploid) 324.945
CNS0095613Golden flower (tetraploid) 114.972
CNS0095614Golden flower (tetraploid) 226.449
CNS0095615Golden flower (tetraploid) 319.854
CRA001975CRR073297Stem 155.327
CRR073298Stem 254.880
CRR073299Stem 360.938
CRR073300Leaf 160.995
CRR073301Leaf 256.579
CRR073302Leaf 355.305
CRR073303Juvenile bud 154.136
CRR073304Juvenile bud 236.378
CRR073305Juvenile bud 370.004
CRR073306Third green 112.933
CRR073307Third green 29.726
CRR073308Third green 313.479
CRR073309Second white 121.051
CRR073310Second white 217.757
CRR073311Second white 315.805
CRR073312Silver flowering 116.396
CRR073313Silver flowering 216.924
CRR073314Silver flowering 315.373
CRR073315Gold flowering 133.438
CRR073316Gold flowering 240.030
CRR073317Gold flowering 335.354
CRR073318Tawny withering 145.758
CRR073319Tawny withering 237.300
CRR073320Tawny withering 343.275