Gene detail

Detail information of GWHGAAZE027154

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285093.1	2.7582E-175	PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Vitis vinifera]
COG	YP_002317076.1	3E-112	3-hydroxyacyl-CoA dehydrogenase
Swissprot	tr\|Q8W1L6\|MFP_ORYSJ	2E-34	3-hydroxyacyl-CoA dehydrogenase
trEMBL	tr\|E0CSH4\|E0CSH4_VITVI	1E-175	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20273.3}
TAIR10	AT3G15290.1	2E-135	3-hydroxyacyl-CoA dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15470094	15474105	+
GWHAAZE00000008	mRNA	15470094	15474105	+
GWHAAZE00000008	exon	15470094	15470282	+
GWHAAZE00000008	exon	15470592	15470813	+
GWHAAZE00000008	exon	15473545	15473657	+
GWHAAZE00000008	exon	15473736	15474105	+
GWHAAZE00000008	CDS	15470094	15470282	+
GWHAAZE00000008	CDS	15470592	15470813	+
GWHAAZE00000008	CDS	15473545	15473657	+
GWHAAZE00000008	CDS	15473736	15474105	+

Transcript Sequence
>GWHTAAZE027188 ATGGCGGAAAATACGATGATCATCGGAGTAATAGGTGCTGGGCAAATGGGCTCTGGAATTGCCCAACTCGCCGCCGTGAACGGTGCTGACGTTTGGCTCCATGACACCGACGGCGATGCTTTCCCCAGAGCTTACAAATCAATTGCCAATTCCATCCAACGCTTTGTCTCCAGAGGTCACCTACCTCAGGCAACAGCGACGGATGCGCTGAGTCGCCTACGGGTTACCTCGAATTTGGAAGATCTTTGCTCTGCGGATGTTATTATTGAAGCTATTGTCGAATCCGAGGACGTGAAGAAGAATTTATTTGCTAAACTAGATAAGATTACCAAAAGTTCAGCAATTTTGGCATCCAATACAAGTTCCATTTCTATTACTCGTTTAGCAGCAGCTACGAGCAGGCCAAAGCAGGTGATTGGCATGCACTTTATGAATCCTCCCCCTATCATGAAACTGGTTGAGATTGTTAGAGGTGCGGATACATCAGACGATACATTTAATGCCACAAAAACCTTGGCCGAGAGGTTTGGCAAGACCATTATTTGCTCACAGGATTATTCTGGCTTCATTGTCAACCGGATACTAATGCCAATGATAAATGAAGCATTTCATACACTGTATACCGGTGTGGCAACAAAGGAAGACATTGATACAGGGATGAAACTGGGAACAAACCACCCAATGGGTCCTCTTGAACTGGCAGATTTCATTGGATTGGATGTTTGCTTGTCGATAATGAAAGTTCTTCACACTGGCCTTGGGGACACCAAATACGCTCCTTGCCCTCTCCTTGTGCAGTATGTTGATGCTGGTCGCCTTGGTAGAAAAAGAGGCGTCGGGGTATACAATTACAGTGAAGTTCCAAAAGAAAGAAAACCCTTGCCTCTACTTTGA

Network for GWHGAAZE027154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02737.19	3HCDH_N	8	185	2.70E-63
PF00725.23	3HCDH	188	284	1.80E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00074	paaH, hbd, fadB, mmgB	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Butanoate metabolism	map00650
		Phenylalanine metabolism	map00360
		Benzoate degradation	map00362

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006631	biological_process	fatty acid metabolic process
GO:0003857	molecular_function	3-hydroxyacyl-CoA dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0070403	molecular_function	NAD+ binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.458
	SRR3591706	second leaf	41.016
	SRR3591707	mature leaf	44.854
	SRR3591708	Shoot apex	39.956
	SRR3591709	Stem	64.886
	SRR3591710	White floral bud	41.554
	SRR3591711	White flower	52.576
	SRR3591712	Green floral bud	28.498
	SRR3591713	Yellow flower	57.046
SRP173429	SRR8316895	Juvenile bud stage	32.325
	SRR8316896	Juvenile bud stage	45.112
	SRR8316897	Juvenile bud stage	23.533
	SRR8316894	Third green stage	20.969
	SRR8316900	Third green stage	62.341
	SRR8316901	Third green stage	58.504
	SRR8316898	Complete white stage	62.406
	SRR8316899	Complete white stage	83.257
	SRR8316903	Complete white stage	86.131
	SRR8316902	Silver flowering stage	56.388
	SRR8316904	Silver flowering stage	78.550
	SRR8316905	Silver flowering stage	43.534
	SRR8316906	Gold flowering stage	115.634
	SRR8316907	Gold flowering stage	124.645
	SRR8316908	Gold flowering stage	119.044
SRP132670	SRR6706286	Control	54.787
	SRR6706287	Light intensity 50%	50.075
	SRR6706288	Light intensity 20%	50.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.225
	CNS0095593	Slightly white alabastrum(diploid) 2	28.177
	CNS0095594	Slightly white alabastrum(diploid) 3	32.013
	CNS0095595	Whole white alabastrum(diploid) 2	28.710
	CNS0095596	Whole white alabastrum(diploid) 3	34.761
	CNS0095597	Whole white alabastrum(diploid) 4	24.611
	CNS0095598	Silvery flower (diploied) 1	66.096
	CNS0095599	Silvery flower (diploied) 2	64.832
	CNS0095600	Silvery flower (diploied) 3	127.384
	CNS0095601	Golden flower (diploid) 1	70.510
	CNS0095602	Golden flower (diploid) 2	99.758
	CNS0095603	Golden flower (diploid) 3	105.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.915
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.515
	CNS0095610	Silvery flower (tetraploid) 1	119.797
	CNS0095611	Silvery flower (tetraploid) 2	139.263
	CNS0095612	Silvery flower (tetraploid) 3	142.223
	CNS0095613	Golden flower (tetraploid) 1	95.230
	CNS0095614	Golden flower (tetraploid) 2	117.125
	CNS0095615	Golden flower (tetraploid) 3	181.649
CRA001975	CRR073297	Stem 1	45.183
	CRR073298	Stem 2	43.818
	CRR073299	Stem 3	55.281
	CRR073300	Leaf 1	48.550
	CRR073301	Leaf 2	52.878
	CRR073302	Leaf 3	59.951
	CRR073303	Juvenile bud 1	57.694
	CRR073304	Juvenile bud 2	68.053
	CRR073305	Juvenile bud 3	59.383
	CRR073306	Third green 1	105.208
	CRR073307	Third green 2	104.240
	CRR073308	Third green 3	94.254
	CRR073309	Second white 1	127.660
	CRR073310	Second white 2	101.803
	CRR073311	Second white 3	80.531
	CRR073312	Silver flowering 1	68.799
	CRR073313	Silver flowering 2	83.151
	CRR073314	Silver flowering 3	65.831
	CRR073315	Gold flowering 1	51.100
	CRR073316	Gold flowering 2	45.206
	CRR073317	Gold flowering 3	39.855
	CRR073318	Tawny withering 1	62.979
	CRR073319	Tawny withering 2	49.147
	CRR073320	Tawny withering 3	55.972