Gene detail

Detail information of GWHGAAZE027092

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ06909.1	0	trehalose-6-phosphate synthase [Camellia sinensis]
COG	YP_004625437.1	1E-85	alpha,alpha-trehalose-phosphate synthase
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|I1YP72\|I1YP72_CAMSI	0	Trehalose-6-phosphate synthase {ECO:0000313\|EMBL:AFJ06909.1}
TAIR10	AT1G78580.1	0	trehalose-6-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14617810	14621168	-
GWHAAZE00000008	mRNA	14617810	14621168	-
GWHAAZE00000008	exon	14617810	14617937	-
GWHAAZE00000008	exon	14618247	14618397	-
GWHAAZE00000008	exon	14618535	14618636	-
GWHAAZE00000008	exon	14618824	14618938	-
GWHAAZE00000008	exon	14619830	14620217	-
GWHAAZE00000008	exon	14620530	14620643	-
GWHAAZE00000008	exon	14620808	14621168	-
GWHAAZE00000008	CDS	14620808	14621168	-
GWHAAZE00000008	CDS	14620530	14620643	-
GWHAAZE00000008	CDS	14619830	14620217	-
GWHAAZE00000008	CDS	14618824	14618938	-
GWHAAZE00000008	CDS	14618535	14618636	-
GWHAAZE00000008	CDS	14618247	14618397	-
GWHAAZE00000008	CDS	14617810	14617937	-

Transcript Sequence
>GWHTAAZE027126 ATGCCTGGGAACAATTACGACGGCAACTCATTCGTCCCCACAAGTCGAATAGAGTGGCTCTTGAGAAATAGAGAGCTAAGAAAGAGTAGCAAGGCTTCTCATTCGAATGAGGCTAGTGATAGAAATGGAGGTACCGACTGCTCTGTCCTTGATTTTCGATGGAGAGAAAGTGATAACTCAGGAGGAGTTTCGTACTTGGAACACTACTTAGAAGGGGTATTGGCCGCCCAAGCACTCAACGGCACTGTTAGACAGCGGCTTTTGGTGGTGGCTAATAGGCTACCGGTCTCTGCTGTTAGGAGAGGAGAGGAGAGTTGGTCGCTTGATATAAGTGCTGGTGGTCTAGTGAGTGCTCTTCTTGGTGTGAAGGAGTTTGAGGCAAGATGGATTGGGTGGGCTGGTGTAAATGTTCCTGATGAGGCAGGGCAGAGGGCACTTACTAGAGCATTGGCTGAAAAGGTGCAATTGTTTGTGGAGGTGTATTCCAGTTTCCTCGATGAAGATACCGTTAATCAATACTACAACGGCTATTGTAACAACATATTATGGCCACTGTTCCATTATCTCGGTCTTCCCCAAGAAGATCGTCTTGCCACTACCAGAAGTTTTCAGTCGCAGTTTGCTGCATATAAAAAAGCGAACGAGATGTTTGCTGATGTGGTATATGAGAATTACGAAGAAGGTGATGTCGTTTGGTGCCATGATTACCATCTCATGTTCCTTCCGGCTTACCTAAAACAACACAATGAAAAAATTAAAGTTGGTTGGTTTCTCCACACACCTTTTCCTTCTTCTGAAATCCACAGGACGTTGCCGTCTCGATCAGAGCTACTGCGTGCTGTCCTTGCTGCCGATTTGGTTGGCTTTCATACGTATGATTATGCGAGGCATTTTGTTAGTGCCTGTACTCGTATTCTTGGACTTGAGGGTACTCCTGTAGGAGTAGAGGATCAAGGAAGGCTGACTCGTGTGGCTGCGTTTCCTATCGGCATAGATTCAGAGCGGTTCATTCAAGCTCTTGAGCTTCCAGAAGTCCAATGTCATATCAAGGAATTACAAGAGATATTTTTTGGGCGAAAGGTAATGCTAGGTGTTGATCGCCTTGATATGATAAAAGGAATTCCCCAGAAGATATTGGCATTTGAAAAGTTTCTTGAAGAAAACCCAAATTGGCGTGAGAAAGTAGTTTTGCTGCAAATTGCTGTGCCAACAAGAACAGATGTCCCTGAATATCAAAAACTTACAAGCCAGGTGCATGAAATTGTTGGACGCATCAATGGCAGATTTGGAACTTTGACAACCGTTCCAATACATCATCTGGTGAGTGTTTTACTTCATCATGAATTATTGACACAAAAA

Network for GWHGAAZE027092

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	86	449	4.30E-129

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.690
	SRR3591706	second leaf	11.231
	SRR3591707	mature leaf	10.528
	SRR3591708	Shoot apex	10.899
	SRR3591709	Stem	11.838
	SRR3591710	White floral bud	8.505
	SRR3591711	White flower	7.207
	SRR3591712	Green floral bud	7.647
	SRR3591713	Yellow flower	1.989
SRP173429	SRR8316895	Juvenile bud stage	9.891
	SRR8316896	Juvenile bud stage	10.943
	SRR8316897	Juvenile bud stage	6.229
	SRR8316894	Third green stage	5.567
	SRR8316900	Third green stage	8.569
	SRR8316901	Third green stage	9.055
	SRR8316898	Complete white stage	0.990
	SRR8316899	Complete white stage	9.838
	SRR8316903	Complete white stage	4.826
	SRR8316902	Silver flowering stage	3.346
	SRR8316904	Silver flowering stage	6.402
	SRR8316905	Silver flowering stage	3.302
	SRR8316906	Gold flowering stage	10.469
	SRR8316907	Gold flowering stage	9.290
	SRR8316908	Gold flowering stage	17.048
SRP132670	SRR6706286	Control	9.637
	SRR6706287	Light intensity 50%	11.108
	SRR6706288	Light intensity 20%	12.288
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.309
	CNS0095593	Slightly white alabastrum(diploid) 2	5.951
	CNS0095594	Slightly white alabastrum(diploid) 3	2.820
	CNS0095595	Whole white alabastrum(diploid) 2	4.380
	CNS0095596	Whole white alabastrum(diploid) 3	3.731
	CNS0095597	Whole white alabastrum(diploid) 4	3.010
	CNS0095598	Silvery flower (diploied) 1	10.525
	CNS0095599	Silvery flower (diploied) 2	6.042
	CNS0095600	Silvery flower (diploied) 3	7.057
	CNS0095601	Golden flower (diploid) 1	6.801
	CNS0095602	Golden flower (diploid) 2	5.690
	CNS0095603	Golden flower (diploid) 3	6.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.926
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.524
	CNS0095610	Silvery flower (tetraploid) 1	9.140
	CNS0095611	Silvery flower (tetraploid) 2	8.068
	CNS0095612	Silvery flower (tetraploid) 3	8.548
	CNS0095613	Golden flower (tetraploid) 1	1.650
	CNS0095614	Golden flower (tetraploid) 2	3.525
	CNS0095615	Golden flower (tetraploid) 3	6.416
CRA001975	CRR073297	Stem 1	14.323
	CRR073298	Stem 2	12.795
	CRR073299	Stem 3	10.724
	CRR073300	Leaf 1	12.270
	CRR073301	Leaf 2	11.319
	CRR073302	Leaf 3	8.021
	CRR073303	Juvenile bud 1	5.812
	CRR073304	Juvenile bud 2	4.669
	CRR073305	Juvenile bud 3	9.054
	CRR073306	Third green 1	0.612
	CRR073307	Third green 2	0.847
	CRR073308	Third green 3	1.025
	CRR073309	Second white 1	0.519
	CRR073310	Second white 2	0.456
	CRR073311	Second white 3	0.829
	CRR073312	Silver flowering 1	0.384
	CRR073313	Silver flowering 2	0.017
	CRR073314	Silver flowering 3	0.632
	CRR073315	Gold flowering 1	2.626
	CRR073316	Gold flowering 2	11.828
	CRR073317	Gold flowering 3	5.417
	CRR073318	Tawny withering 1	7.343
	CRR073319	Tawny withering 2	3.896
	CRR073320	Tawny withering 3	6.558